Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0860 ATGTTCGGTAATACATTACACCAGAAGTTGGGTAGCTCCTCCGTTCCATCAGCACAAGTCCACACTTCACAACAAGCCTTTATTTCAGCGTTCCATTTCAGAGCCAGTGACACAAACATGGCTCACGAGATGAAACAGGAGGAAGTGAAAATCATAGAGCGGTGTCAAGTTGGTCCACCACCAAGTTCACTTCCCTCGACCACCCTTCCCCTCACTTTCTTTGATATTCCATGGTTCTTCTGCCACCCCATCAAACGCATCTTCTTCTACGAGTTCCCCCATCCCACGCACCACTTCCTCCAAACAGCACTTCCCATTCTGAAACACTCTCTTTCCCTCACTCTTCAACACTTCTTCCCCTTCGCCGCCAACCTCATCGTTCCACCACAACAACACCTCTCTTACATCCGCTACCTCGACGGTGACTCTCTCTCCTTCGCCGTTGCGGAGTCCACCGCAGACTTCACCCTCCTCACATCCGATTCACCGCAAGACGTTCGAAATTGGCACCCTCTTGTTCCCACGTTGTCTCCCCCACGTGTTGAGCAAGATGGCACACGTGTGTTCCCTCTCATGGCCATTCAGGTTACGATTCTACCAAACTCTGGCTTCAGCATCTGTCTCACTTTCAACCACCTTGCTGGGGATGGTAAATCACTTCATCATTTCGTGAAGTTTTGGGCCTCTCTTTGCAAGACAAGAGGGGACATGGCTTCCCTTGAAGCCTCTTTGCCTCTTCCTTCACACGAGAGGGACAGAGTTAAAGACCCAAAGGGCCTTAAGCTCATTTATTTTCAAGAACTAGAACGTCGCGAGTCGAGGAGCATGGAGTTTGCGGGGCTCGTGCGAGATGTTTCCACTAACAAGGTTCGCTTTACTGTTTCATTGAGTCGTGAGCAAGTTGAGAAACTGAAGAAGTGGGTTTCTCTCAAATGTGCCAGCTACACTTCTGGGACACTGCACATATCAACCTTTGTGGTGACATGCTCCTTGATTTGGGTTTGCATAATTGGATCAGAAGAGAGCCAAGGAGGTTGTGTTGCACAAAACGGTGACGAACTGTGCTACTTGGTGTTTCTAGCAGATTGTCGTGATCATCTTGAATTTTCCTTACCTTTAACAAGAGTGAGGCTAGTGGGAGAAAATGGGATCGTTGGGGTAGCAAACGCTATTGAAAGGCAAATTAGAGATTTGAAGAGTGATGCATTGAGAAATGCTGAAACGTTGATGTCAGATTATAGAGAGTTAGGGAAACCGGGTAAATCTGTGTTGGTAGTTGCGGGGTCACCAAAATTGTCTGTGTACCAGACTGATTTTGGATGGGGCAAGCCTAAGAAATCTGATGCAGCTCATATTGAATCGTCAGGATCCATTTCTCTTTCGGACTGTAGAGACGAAAAAGGAGGAATTGAGCTTTGGAGTTCTTACCACACCTTTATGAATCCGGTTAATGAAGGCACAACCATCGTTATTGGTCTTCAGCGGCTCAAGAAGGGTATATACATGATAGGATTCACTTTGCAGTGGTGGCATGAAGGGTCACCTAATGGAGTCTTCCTGTTTGTCAGATTGGTGAAGTTGTTAGAGGACATCATGGATGGCAACTCCGCATGGATGGCTGGCCTGCACATGGAGACAAAAGATATTGCTGCAAGATTTATGGCCTTTTGTCAGCAAGGACCTCAGACAGTTTACATTCTTTCTGCTACTGGTGCAATCTGCAATGTCACCCTTCGACAACCAGCAATGTCAGGGGGTATTGTGTCTATGAGGAagcgttttgaaaattttgacccATCATCAGTTGCACAGTTTACTGAGAAATTGCTTACACAATCAGATTCACATCACATAGAAGTTAATACGAGTAGCTTCTGCGCCTTGGACTTGGTTTTGCAGAGTAACTGGAGTAAAAATGTTTCCAAACATTGCTCCGGGCACTTCACGATTCCTACCTACCAACCTCGTCCCCGTGCAACGCATCTTCTTCTACGAGTTTCCCCACCCCATTCATCACTTTCTGCAAACAACGTTTCCCATTCTGAAACACTCTCCAACACTTCTTCCCCTTCGCCGCCAACCTCATCGTTCCATCACAACTCTACCTCTCTTAATGGCGACTCCCTCTCCTTCACCGTTGCGGAGTCCGCTGTAGACTTCACCCTCCTCACATCTGATTCACTACAAGACGTTCGAAATTGGCACCCTCTTGTTCCTACGTTGTCTTCCCCATGTGTTGAGCAAGATGGCACGCATGAGTTCTCTCTCATGGCCATTCAGGTCACGGTTCTACCAAACTCTGGCTTTAGCATATGTCTCACATTCAACCACCTTGCCAGCGATGGTAAATCATTTCATCATTTCGTTAAGTTTTGGGGCATTCTTTGCAAGGCAAGAGGGGACATGGCTTCCCTTGAAACCTCTTTGTCCCTTCCTTCACATGAGGGACAAAGTTAA 2457 0.4672 MFGNTLHQKLGSSSVPSAQVHTSQQAFISAFHFRASDTNMAHEMKQEEVKIIERCQVGPPPSSLPSTTLPLTFFDIPWFFCHPIKRIFFYEFPHPTHHFLQTALPILKHSLSLTLQHFFPFAANLIVPPQQHLSYIRYLDGDSLSFAVAESTADFTLLTSDSPQDVRNWHPLVPTLSPPRVEQDGTRVFPLMAIQVTILPNSGFSICLTFNHLAGDGKSLHHFVKFWASLCKTRGDMASLEASLPLPSHERDRVKDPKGLKLIYFQELERRESRSMEFAGLVRDVSTNKVRFTVSLSREQVEKLKKWVSLKCASYTSGTLHISTFVVTCSLIWVCIIGSEESQGGCVAQNGDELCYLVFLADCRDHLEFSLPLTRVRLVGENGIVGVANAIERQIRDLKSDALRNAETLMSDYRELGKPGKSVLVVAGSPKLSVYQTDFGWGKPKKSDAAHIESSGSISLSDCRDEKGGIELWSSYHTFMNPVNEGTTIVIGLQRLKKGIYMIGFTLQWWHEGSPNGVFLFVRLVKLLEDIMDGNSAWMAGLHMETKDIAARFMAFCQQGPQTVYILSATGAICNVTLRQPAMSGGIVSMRKRFENFDPSSVAQFTEKLLTQSDSHHIEVNTSSFCALDLVLQSNWSKNVSKHCSGHFTIPTYQPRPRATHLLLRVSPPHSSLSANNVSHSETLSNTSSPSPPTSSFHHNSTSLNGDSLSFTVAESAVDFTLLTSDSLQDVRNWHPLVPTLSSPCVEQDGTHEFSLMAIQVTVLPNSGFSICLTFNHLASDGKSFHHFVKFWGILCKARGDMASLETSLSLPSHEGQS 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0860 818 Pfam Transferase family 387 473 - -
Ssu8g0860 818 Pfam Transferase family 705 797 - -
Ssu8g0860 818 Pfam Transferase family 49 372 - -
Ssu8g0860 818 PANTHER - 49 472 - -
Ssu8g0860 818 Gene3D - 682 817 IPR023213 -
Ssu8g0860 818 Gene3D - 48 279 IPR023213 -
Ssu8g0860 818 Gene3D - 286 484 IPR023213 -
Ssu8g0860 818 PANTHER - 704 815 - -
Ssu8g0860 818 MobiDBLite consensus disorder prediction 670 701 - -
Ssu8g0860 818 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 704 815 - -
Ssu8g0860 818 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 49 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0860 Ssu-Chr8 14582376 14588151 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0860 87 444 Monolignol Biosynthesis Gene Families AT5G48930 23.980 3.39e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0860 - - gmx:100797294 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0860 8 14582376 14588151 Ssu8g0860 8 14582376 14588151 ECH