Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0848 ATGGATTTTGACCTCGAAAACCCTCTTGGAAACTTCCACGACCTTCCCTGCGACGCAGTCCCTTCCCTCTTCCTCATCGAATCCGACCACATCCCACCTCCGAATTACTGTCAGAGTCTCAAAGCCAGCGACTTCGACATCTCCGTTAGAAGAGATGTCGTCTCTTTGATCTCACAGTTGTCCTGCACCTTCGATCCAGTTCTACCTTACTTAGCTATCAACTACTTGGATCGCTTCCTCGCTAACCAAGGAATATTGCAACCAAAGCCATGGGCAAACAAGCTTCTTGCGATCTCATGCTTTTCTCTAGCTGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTCCAGGTTCTTCTGAATCATGGTGATGGCGGTGCCATTTTTGAGGCACAAACAATTCAAAGAATGGAAGGCCTTGTCTTGGGGGCTCTCCAGTGGCGAATGCGTTCAATCACGCCCTTCTCTTTCATTCCTTTCTTCGTCAGTTTGTTCAGGCTCGGAGACCCAGCATTGAGGCAGGTTCTGAAGAATCGAGCGTCTGAAATTATACTCAAGTCACAAAGGGagATAAAGGTCTTGGAATTCAAGCCATCTATAGTTGCTGCGTCAGCCCTTCTGTATGCTTCACATGAGTTGTTTCCCTTTCAATATCCGTGCTTCTTAAGAGCAATATCCGATTGTTCATATGTTAATAAAGAAACTGTGGCACAATGTTATAATGTTATACAAGACATAGCCAGGGAGGAGTACGAATCTGTGTTGAACATAAATTCAAGTTCAGACACACCGGTTAATGTGTTAGACGAGCATTTCCTGAGCATGGAAAGTGAAAAAACCAACGGAATCAACGTTGCTCCCACCATGCAGGACTTCAAGAGAAGGAAAATCACCGATTATGGCAACAAACGCACGGTCCCGTTTTCTCATTTTCATCAATGCTGA 948 0.4515 MDFDLENPLGNFHDLPCDAVPSLFLIESDHIPPPNYCQSLKASDFDISVRRDVVSLISQLSCTFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKTEYSATDVQVLLNHGDGGAIFEAQTIQRMEGLVLGALQWRMRSITPFSFIPFFVSLFRLGDPALRQVLKNRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKETVAQCYNVIQDIAREEYESVLNINSSSDTPVNVLDEHFLSMESEKTNGINVAPTMQDFKRRKITDYGNKRTVPFSHFHQC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0848 315 Gene3D - 33 151 - -
Ssu8g0848 315 SUPERFAMILY Cyclin-like 135 249 IPR036915 -
Ssu8g0848 315 Pfam Cyclin, N-terminal domain 28 150 IPR006671 -
Ssu8g0848 315 PANTHER CYCLINS 5 302 IPR039361 -
Ssu8g0848 315 Gene3D - 23 242 - -
Ssu8g0848 315 CDD CYCLIN 50 143 IPR013763 -
Ssu8g0848 315 Pfam Cyclin, C-terminal domain 153 254 IPR004367 -
Ssu8g0848 315 SUPERFAMILY Cyclin-like 13 150 IPR036915 -
Ssu8g0848 315 SMART Cyclin_C_2 153 268 IPR004367 -
Ssu8g0848 315 CDD CYCLIN 153 244 IPR013763 -
Ssu8g0848 315 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 302 - -
Ssu8g0848 315 SMART cyclin_7 51 144 IPR013763 -
Ssu8g0848 315 SMART cyclin_7 157 246 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0848 Ssu-Chr8 14358660 14360380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0848 1 299 Core Cell Cycle Gene Families AT4G03270 46.326 1.02e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0848 K18812 - gmx:100799951 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0848 8 14358660 14360380 Ssu8g0848 8 14358660 14360380 ECH
Ssu8g0848 8 14358660 14360380 Ssu3g2192 3 71158594 71161111 PCT