Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0847 ATGGTGAGAACCCCGTCCCGTGACACAAGTGAACTTAAGAAGGGTACTTGGACTCCAGAGGAGGATAGGAAGTTAATAGCATATATCACTCGGTATGGCTGTTGGAATTGGCGCCAACTCCCAAGATTTGCAGGTCTGACAAGGTGTGGAAAGAGTTGCAGACTTAGATGGCTGAATTATCTCAGGCCCAACATAAAAAGAGGGAACTATACTGAACAAGAAGAAGAGATTATAATCAGACTGCACGAAAAGCTGGGTAACAAGTATGTTCACATTTCAAGAGAAATTGCCCACAGCATTGCACAGCATCAAAAGCTATACAGGGGAACTATAAATAAGGACAAATCTTATATAGAgtttttagtgttgttcttcaatcaaaattag 387 0.3876 MVRTPSRDTSELKKGTWTPEEDRKLIAYITRYGCWNWRQLPRFAGLTRCGKSCRLRWLNYLRPNIKRGNYTEQEEEIIIRLHEKLGNKYVHISREIAHSIAQHQKLYRGTINKDKSYIEFLVLFFNQN 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0847 128 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ssu8g0847 128 CDD SANT 16 61 IPR001005 -
Ssu8g0847 128 SMART sant 66 110 IPR001005 -
Ssu8g0847 128 SMART sant 13 63 IPR001005 -
Ssu8g0847 128 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 95 - -
Ssu8g0847 128 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu8g0847 128 SUPERFAMILY Homeodomain-like 15 92 IPR009057 -
Ssu8g0847 128 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 95 - -
Ssu8g0847 128 Gene3D - 6 67 - -
Ssu8g0847 128 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0847 Ssu-Chr8 14334302 14335050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0847 1 93 MYB Transcription Factor Family AT3G02940 63.441 1.18e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu8g0847 Myb_DNA-binding 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0847 K09422 - cpap:110816992 174.481