Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0846 ATGGTGAGAACCCCTTGTTGTGaccaaaatggactcaagaaagGTGCATGGACACCAGAGGAAGACAGGAAGTTGATTGCTTATGTCACTAAGTATGGCCACTGGAATTGGCGTTTACTCCCCAAGTTTGCAGGACTTGCAAGGTGCGGTAAGAGTTGCAGGCTGAGGTGGCTGAACTATCTACGGCCCGATGTCAAAAGAGGGGATTTTAgtcatgaagaagaagaaaccatTGTCAGACTTCATGAAAAGCTGGGTAATAGATGGTCAGCAATTGCTGCACAATTGTCAGGGAGGACGGATAACGAAATAAAGAATCACTGGCACACGGCCCTTAAGAAGCGTTTTAAGCAAAAGTCAGACACTAAACGCGGAACTGGAAAAGCCAAACTCTCCCAGTCAATGGAAAGAGTGACAGAGAATTGCGGTGACCCGGATTCCAGTCCATTGTCTCCACAACCATCATGTAGTGGATTCTCCTGGATAACGACAGACCCTGCAGCCACCACAAACAACGAAAATTCGGTTCTAGAGCATGATGATGGCCTTGCATTTTTGGACGCGTACACGGAGCCTGTGGGTGCAAATTTCTGGACAGAGCCTTATTTAATTGACAATTCCTATGTCCCACCTGAGTGTGAACCCGAATACTTTAGCCCTATGTGCGACGTAGAACTTTGGAGCCAGAATGATTTGCATTTGCAGGAATGTGAGGGTTTATTCTACTGA 729 0.4417 MVRTPCCDQNGLKKGAWTPEEDRKLIAYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPDVKRGDFSHEEEETIVRLHEKLGNRWSAIAAQLSGRTDNEIKNHWHTALKKRFKQKSDTKRGTGKAKLSQSMERVTENCGDPDSSPLSPQPSCSGFSWITTDPAATTNNENSVLEHDDGLAFLDAYTEPVGANFWTEPYLIDNSYVPPECEPEYFSPMCDVELWSQNDLHLQECEGLFY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0846 242 Gene3D - 7 66 - -
Ssu8g0846 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu8g0846 242 MobiDBLite consensus disorder prediction 115 155 - -
Ssu8g0846 242 CDD SANT 16 61 IPR001005 -
Ssu8g0846 242 Gene3D - 69 140 - -
Ssu8g0846 242 MobiDBLite consensus disorder prediction 127 155 - -
Ssu8g0846 242 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu8g0846 242 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu8g0846 242 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu8g0846 242 CDD SANT 70 110 IPR001005 -
Ssu8g0846 242 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 207 - -
Ssu8g0846 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu8g0846 242 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 207 - -
Ssu8g0846 242 SMART sant 13 63 IPR001005 -
Ssu8g0846 242 SMART sant 66 114 IPR001005 -
Ssu8g0846 242 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu8g0846 242 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0846 Ssu-Chr8 14288359 14291464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0846 1 207 MYB Transcription Factor Family AT2G31180 47.826 1.96e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g0846 Myb_DNA-binding 4.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0846 K09422 - gmx:100815765 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0846 8 14288359 14291464 Ssu8g0846 8 14288359 14291464 ECH
Ssu8g0846 8 14288359 14291464 Ssu3g2194 3 71228259 71229494 PCT