Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0842 ATGAGAAACCCATGGTTCTGTCTTTCTCTTCTCATCGGCTTCTCTTTGTACACTCATCCTTCCCTTGCTGCTCTCACCACCATCTCCGCTGACCAAACTCTCAATGGCGATCAAACTCTCGTCTCTGAAGGTGGGGTCTTCGAACTGGGTTTCTTCAAGCCAGGTAATTCCTCTAACTACTACATAGGCATATGGTACAAAAAGATCAGCATAAAAACAATTGTTTGGGTAGCAAATAGAGACAATCCAGTCTCTGATAAAACCACTGCCATGTTAACAATATCGGGTGGTAATTTAGTTCTCTTAGATGGGTCTTCAAATCAAGTTTGGTCAACAAACACGAGTTCTCCCATGTCAGGTTCTGTCGTAGCTGTCCTCCTAGATATTGGGAATCTCATCTTAAGCGATAGGCCTAATGATGCTTCGGACCCTTTGTGGCAGAGTTTTGATCACCCAACAGACACGTTCCTTCCAGGTGGCAAAATCAAACTGGACAATAAAACAAAGCAGCCTCGATACCTCACTGCATGGAAGAATATAGAAAATCCTGCTACGGGTCTCTTCTCTCTGGAACTAGACCCCAAAGGATCCACTGCTTATTTCATTCGTTGGAACAAGTCTGAAGAGTATTGGACAAGTGGTGCTTGGAATGGACACATTTTCAGTTTGATTCCCGAGATGAGGTTGAATTATATCTACAATTACTCGTTTGTGTCAAACGAGAATGAGAGCTATTTCACCTACTCCATGTATGATTCTTCCATTTTATCTCGGTGTGTGATGGATATCTCTGGGCAGATCCAGCAATTGTCATGGTTGGAGAATGCTCAGCAGTGGAACTTGTTTTGGTCACAGCCGAGACAACAATGTGATGTATATGCCTTTTGCGGTGCTTTTGGGAGATGCACTGGAAGCGCGTTGCGGTATTGTAATTGTTTGCCTGGTTTTGAGCCAAAGTCACCCTCTGATTGGAATCTGGAGGATCACTCAGGTGGGTGTAAGAGGAAAGCGAAGTTGCAATGCGAGAATTCCAATCCCTCTAACGGGAATAAAGACGGGTTTATAGCAATTCCCAACATGGTATTACCTAAACATGCACAATCTGTGGGGTCAGGGAATGTAGGGGAATGTGAATCAATCTGCTTGAACAGCTGCTCCTGCACAGCTTATGCGTTTGACAGTAACGGGTGTTCAATTTGGTTTGGCAACCTTCTGAATGTGCAACAGCTATCTCCAGATGATAGTAGCGGACAAACTTTGCATCTCAAACTTGCAGCATCTGAGTTTCAAGATGATAAAAACAGAAGCGGGACGATTATTGGTGTGGTCGTTGGCATTGTGGTTCTCTTGGCCCTTCTTCTGTTTGTCATGAATATGATTAGGCGAAGAAAGAGAATAGGTGGAACAGTGGAAGGTTCGTTGGTGGCATTTGGGTACGGAGATTTGCAAAATGCAACGAAGAATTTCTCTGAGAAATTGGGAGGAGGGGGGTTTGGCTCTGTTTTCAAAGGAACATTGGGTGACTCCAGTGTGGTAGCAGTGAAGAAGTTGGAAAGTTTTAGCCAAAGAGAGAAACAGTTTCGTACAGAAGTTAGTACACTAGGGACAATACAACACGTTAATCTTGTTAGGCTCCGTGGATTCTGCTCTGAAGGTGCCAACAAGCTGCTAGTTTATGATTACATGCCAAATGGTTCCTTGGATTTCCATTTGTTCCAGAACAAGAACTCTAAGGTGTTAGACTGGAAAACGAGATACCAAATTGCGTTGGGAACAGCAAGGGGATTAGCTTACCTTCACGAGAAGTGCAGAGACTGTATCATACACTGTGATGTAAAGCCAGAAAACATTCTCCTAGATGCTGATTTTTGTCCCAAGATTGCAGACTTTGGCCTGGCTAAGCTGGTTGGAAGGGATTTCAGCAGAGTCCTCACAACCGttagaggaacaaaatattatcttgCTCCAGAGTGGATTTCTGGGGTGCCTATCACAGCCAAAGCCGACGTGTACAGCTACGGGATGATGCTTTTTGAGTTTGTGTCAGGTAGGAGGAACACTGAGCCATGTGAAGATGACCAATTTACCTTCTTTCCTACCTGGGCGACAAACGTAGTTGCCCAAGGTGGCAATGTTCTTAGCCTTTTGGACCCTAGTTTGGAGGGAAATGCTGACACTGAGGAGGTGACTCGAATAACAACAGTTGCATCGTGGTGTGTCCAAGACAATGAGACTCACCGGCCAACCATGGGTCAGGTAGTTCATATCCTTGACGGGATCTTGGACGTGAATTTACCTCCAATTCCAAGACCACTTCAAGTGTTTGTTGACAACTAG 2337 0.4429 MRNPWFCLSLLIGFSLYTHPSLAALTTISADQTLNGDQTLVSEGGVFELGFFKPGNSSNYYIGIWYKKISIKTIVWVANRDNPVSDKTTAMLTISGGNLVLLDGSSNQVWSTNTSSPMSGSVVAVLLDIGNLILSDRPNDASDPLWQSFDHPTDTFLPGGKIKLDNKTKQPRYLTAWKNIENPATGLFSLELDPKGSTAYFIRWNKSEEYWTSGAWNGHIFSLIPEMRLNYIYNYSFVSNENESYFTYSMYDSSILSRCVMDISGQIQQLSWLENAQQWNLFWSQPRQQCDVYAFCGAFGRCTGSALRYCNCLPGFEPKSPSDWNLEDHSGGCKRKAKLQCENSNPSNGNKDGFIAIPNMVLPKHAQSVGSGNVGECESICLNSCSCTAYAFDSNGCSIWFGNLLNVQQLSPDDSSGQTLHLKLAASEFQDDKNRSGTIIGVVVGIVVLLALLLFVMNMIRRRKRIGGTVEGSLVAFGYGDLQNATKNFSEKLGGGGFGSVFKGTLGDSSVVAVKKLESFSQREKQFRTEVSTLGTIQHVNLVRLRGFCSEGANKLLVYDYMPNGSLDFHLFQNKNSKVLDWKTRYQIALGTARGLAYLHEKCRDCIIHCDVKPENILLDADFCPKIADFGLAKLVGRDFSRVLTTVRGTKYYLAPEWISGVPITAKADVYSYGMMLFEFVSGRRNTEPCEDDQFTFFPTWATNVVAQGGNVLSLLDPSLEGNADTEEVTRITTVASWCVQDNETHRPTMGQVVHILDGILDVNLPPIPRPLQVFVDN 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0842 778 CDD B_lectin 31 152 IPR001480 -
Ssu8g0842 778 SMART blect_4 31 152 IPR001480 -
Ssu8g0842 778 SMART serkin_6 487 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0842 778 Gene3D - 22 150 IPR036426 -
Ssu8g0842 778 Pfam PAN-like domain 349 407 IPR003609 -
Ssu8g0842 778 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 4 778 - -
Ssu8g0842 778 SUPERFAMILY Protein kinase-like (PK-like) 475 774 IPR011009 -
Ssu8g0842 778 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Ssu8g0842 778 PIRSF SRK 2 778 IPR024171 GO:0004674
Ssu8g0842 778 CDD PAN_AP_plant 338 425 - -
Ssu8g0842 778 Gene3D Transferase(Phosphotransferase) domain 1 562 765 - -
Ssu8g0842 778 SMART ntp_6 349 424 IPR003609 -
Ssu8g0842 778 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 4 778 - -
Ssu8g0842 778 Pfam Protein kinase domain 490 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0842 778 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Ssu8g0842 778 ProSiteProfiles Protein kinase domain profile. 487 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0842 778 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 217 IPR036426 -
Ssu8g0842 778 Pfam D-mannose binding lectin 73 178 IPR001480 -
Ssu8g0842 778 ProSiteProfiles PAN/Apple domain profile. 341 425 IPR003609 -
Ssu8g0842 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Ssu8g0842 778 ProSitePatterns Protein kinases ATP-binding region signature. 493 516 IPR017441 GO:0005524
Ssu8g0842 778 CDD STKc_IRAK 493 760 - -
Ssu8g0842 778 SUPERFAMILY Hairpin loop containing domain-like 350 400 - -
Ssu8g0842 778 Gene3D Phosphorylase Kinase; domain 1 456 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0842 Ssu-Chr8 14175909 14178245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0842 433 764 Receptor kinase-like Gene Family AT1G56120 44.282 5.02e-75 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu8g0842 Pkinase 7.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0842 - - gmx:102667456 1285.01