Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0839 ATGAAGAACTGCGAGCTGTGCAAGGCTCCGGCTAGGACCTTCTGCGAGCCGGACCAGGCGAGCTTATGCTGGGACTGCGACGCCAAGGTTCACGGAGCCAACTTCCTTGTCGCCAGACACACCCGCACGCTCCTCTGCCACGCGTGCCAGTCACTCACGCCGTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACCGTCTCGCTGTGCCAGCGGTGCGCCGGCGGAACCACCGAACAGGGCCAAGAGAGCGAAGGCGGCAATGACGACGACATAGACACCGACGAAGAAGACGACGACGAGGAGGAGGAAGAGACCGAGGACGAGGTTGCCGCCGATGAGGACGGCGACAACCAGGTTGTCCCTTGGTCCTCCGCGCCGCCGCCACCCGCTCCGAGCTCTTCCAGCAGTGAAGAGTCGGTTAGCAGGTGCAACAACGGCGACGAGGATGTTTCTAAGCCAGTTACCACATTGAAACGACGTCGCGAGGATAATGATTTTCAGGGTTCGAATTCGAGCAGTTTGGGATATCAACGGAGGGAAGTGGAGAGAGGAAGTTGGTTGGTTAGGGTGCGACCGCGAACCGCCGCAGAAGGTGACGATGTGGCGGTTGAGAGGAGGAGCGTTACACCGGCGTCGCCGTACGGTTGCTGTGATGATAGAGCCTCCGAAGACGTTTGA 678 0.6106 MKNCELCKAPARTFCEPDQASLCWDCDAKVHGANFLVARHTRTLLCHACQSLTPWKASGAALGNTVSLCQRCAGGTTEQGQESEGGNDDDIDTDEEDDDEEEEETEDEVAADEDGDNQVVPWSSAPPPPAPSSSSSEESVSRCNNGDEDVSKPVTTLKRRREDNDFQGSNSSSLGYQRREVERGSWLVRVRPRTAAEGDDVAVERRSVTPASPYGCCDDRASEDV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0839 225 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 225 - -
Ssu8g0839 225 MobiDBLite consensus disorder prediction 134 151 - -
Ssu8g0839 225 SMART bboxneu5 1 45 IPR000315 GO:0008270
Ssu8g0839 225 MobiDBLite consensus disorder prediction 75 185 - -
Ssu8g0839 225 CDD Bbox1_BBX-like 4 45 - -
Ssu8g0839 225 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Ssu8g0839 225 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Ssu8g0839 225 MobiDBLite consensus disorder prediction 152 166 - -
Ssu8g0839 225 MobiDBLite consensus disorder prediction 83 114 - -
Ssu8g0839 225 PANTHER - 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0839 Ssu-Chr8 14101795 14102920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0839 2 129 C2C2-CO-like Transcription Factor Family AT4G27310 44.720 7.64e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu8g0839 zf-B_box 4.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0839 - - gmx:100801024 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0839 8 14101795 14102920 Ssu8g0839 8 14101795 14102920 ECH
Ssu8g0839 8 14101795 14102920 Ssu3g2203 3 71569917 71570584 PCT