Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0838 ATGAGAACTAACCAAGTTCTGTTCTCCCTTCTTTCTTGGGCGCTATGTTTCCAACTCTGTTCAGCTGGAGATACCTTGAACGCTGGCGAGACGATGTCTCAGGACTCAGGGGGGCACCTTGTTTCAGctaaactcaaatttgagttgGGCTTCTTTTCTTTACATGCTGAAAGTGGTAGCAGGATTGAAAAAAGATACTTTGGGATATGGTATTACAGGTTGAAACCACGAACAGTGGTATGGGTTGCCAATAGAAATGCGCCTATTTTAGATTCTACTGGAGTTTTTCAAATTGCAGACGATGGAAATCTGGTGGTAGAAGGTGCATCAAAAAGGTATTGGTCCTCTGAACTTAAAGGCTCCTCCTCGTCCACAAACAGAACAGTGAGGCTGCTGGATTCTGGGAACCTAGTCCTAGTGGACGATAACTCGGGAACGAGTTACTTGTGGCAGAGCTTCCAAAACCCAACAGACACGTTTCTTCCTGGCATGAAGATGGATGCAAGTTTAACATTGACTTCTTGGAGAGACGCAGGTGACCCGGAACCTGGGAACTTCACCTTTAAGATGGCTTACATAGCAGACGGTCAAAACTTCGTAATGCATAAGCAATCACAACTTTACTGGACACTTGAGGTTGTTGGACGCGAAGCAGAAGCGATTCCCCTAATAATACGTTACTTGTTGGACAACACCACATCGCACaagatttcaaacaaaataatcgTTTACTACAGTTACGAGAATTCAAGGCTACTATTGAATTCTAGCGGGGAGATACAATTGCTGAGGTGGAATGAGACAGACGAGGAATGGGTTAAGCTATGGTGGGGGCCAGCTGACTCGTGTGACATACATGACTATTGTGGGAGCTTTGGCATctgtaacaaaaataatttgattcgCTACCAAGAAATGTCTACAGAAACAGAAGCAGAATGCCAATCCTTATGCCTTAACACTAACAAGTGTCCCGAGTCCCAGTGCCAGGCATATTCCTATAGTGCGCCTACATATGACCGTGGTTCCTATACATGCAAGATCTGGACACGAGATTTGTCTACTGTTGTGGAGGAGTATGATCGTGGTCGTAATCTTTCTATCCTGGTCAAGAGTTCAGATATAGCACCAACAGCAAAAACATGTGAACCTTGCGCCACATATGTGATTCCTTATCCGCTAAGCACTGGGCCAAACTGTGGAGACCCCATGTACAACAAGTTCAATTGCAACAAATCGACAGGCCACGTTAGCTTCATGATGCAGGGAGGAATATCATACCAAGTTACTCGGATCGATGAACATGCCAGAATGTTTTTCATTCAAACAGATGATTCACATTCCTGTAATTCCAGTACCAGCTATCAAAATGACACTGATTTTCCATTTAATGTAACTGAATGCATTAAAGATGTTGGAATCAAAATTAATTGGCTACCAGCACCAGAGCCGCCCTGTATTAATCTAATAGACTGCAAGAATTGGCCCCATTCAGCATGCAGAGCAACAATTGGAAGCGAAAGAAGGTGCCATTGCGATTCAAACTATAAGTGGAATGACACAATTATGCGTTGTGCCCAAGAAGAGCCGTCAAGAAACCATTCAATCCACCGACTCGCATTGATTCTTACAGTAATTCTTACGGGCATGGCAATTCTGGCAGGCACAATAGCATTTGTCATTGTGCGGAAAAAGAAAACAGTCCATAAGCTTGATCGGGCAAGCACCCGAGTTCAGGAGAGCTTGTACGAGAGCGAAAGACACGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAGGACATTGAAGGCATTGAAGTACCCTGTTATTCTTATGCAAGCATTCTAGCGGCTACAGATAATTTCTCAGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTGTATAAGGGAAGGTTTCCTGGAGGTCAAGATATAGCTGTAAAGAGGCTTTCAAGTGTTTCCACCCAAGGCTTACAGGAATTCAAGAATGAGGTTACTTTGATTGCCAAACTTCAGCATCGGAACCTTGTTAGACTTAGGGGATATTGCATAAAAGGagatgaaaaaattttactttatgaATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGACCGGACACGAACTTTACTCCTGGATTGGCCAATGCGGTTTGAGATAATTGTAGGCATTGCGCGTGGCCTGCTCTATCTTCACCAAGACTCTAGATTGAGAGTGATTCATAGAGACTTGAAAACCAGCAACATTCTTCTAGATGAGGAGATGAATCCAAAGATATCAGACTTTGGCCTTGCCAAAATATTTGGGGGAAAGGAAACTGAAGCAAGTACAGAGAGGGTAGTGGGAACCTATGGATATATGGCTCCAGAGTATGCCTTGGATGGACTTTTTTCAATCAAATCTGATGTTTTCAGCTTTGGAGTAGTCCTACTTGAGATTCTTAGTGGAAAAAAGAACACGGGATTCTATCAATCCAAACAAATTTCTAGCCTTTTGGGTTATGTATGTTCTTCTGTTGCATTTTTGGGTTCTGTGTATTTTTGTGATATGTTGACTTACTAA 2577 0.4172 MRTNQVLFSLLSWALCFQLCSAGDTLNAGETMSQDSGGHLVSAKLKFELGFFSLHAESGSRIEKRYFGIWYYRLKPRTVVWVANRNAPILDSTGVFQIADDGNLVVEGASKRYWSSELKGSSSSTNRTVRLLDSGNLVLVDDNSGTSYLWQSFQNPTDTFLPGMKMDASLTLTSWRDAGDPEPGNFTFKMAYIADGQNFVMHKQSQLYWTLEVVGREAEAIPLIIRYLLDNTTSHKISNKIIVYYSYENSRLLLNSSGEIQLLRWNETDEEWVKLWWGPADSCDIHDYCGSFGICNKNNLIRYQEMSTETEAECQSLCLNTNKCPESQCQAYSYSAPTYDRGSYTCKIWTRDLSTVVEEYDRGRNLSILVKSSDIAPTAKTCEPCATYVIPYPLSTGPNCGDPMYNKFNCNKSTGHVSFMMQGGISYQVTRIDEHARMFFIQTDDSHSCNSSTSYQNDTDFPFNVTECIKDVGIKINWLPAPEPPCINLIDCKNWPHSACRATIGSERRCHCDSNYKWNDTIMRCAQEEPSRNHSIHRLALILTVILTGMAILAGTIAFVIVRKKKTVHKLDRASTRVQESLYESERHVKGLIGLGSLEEKDIEGIEVPCYSYASILAATDNFSDSNKLGRGGYGPVYKGRFPGGQDIAVKRLSSVSTQGLQEFKNEVTLIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRTRTLLLDWPMRFEIIVGIARGLLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETEASTERVVGTYGYMAPEYALDGLFSIKSDVFSFGVVLLEILSGKKNTGFYQSKQISSLLGYVCSSVAFLGSVYFCDMLTY 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0838 858 ProSiteProfiles Bulb-type lectin domain profile. 17 152 IPR001480 -
Ssu8g0838 858 ProSiteProfiles Protein kinase domain profile. 623 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0838 858 ProSiteProfiles PAN/Apple domain profile. 289 373 IPR003609 -
Ssu8g0838 858 Gene3D Transferase(Phosphotransferase) domain 1 699 845 - -
Ssu8g0838 858 CDD B_lectin 36 156 IPR001480 -
Ssu8g0838 858 CDD STKc_IRAK 629 823 - -
Ssu8g0838 858 PIRSF SRK 301 390 IPR024171 GO:0004674
Ssu8g0838 858 PIRSF SRK 1 304 IPR024171 GO:0004674
Ssu8g0838 858 PIRSF SRK 481 851 IPR024171 GO:0004674
Ssu8g0838 858 Gene3D Phosphorylase Kinase; domain 1 597 698 - -
Ssu8g0838 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
Ssu8g0838 858 SMART blect_4 31 156 IPR001480 -
Ssu8g0838 858 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 177 IPR036426 -
Ssu8g0838 858 Pfam D-mannose binding lectin 78 169 IPR001480 -
Ssu8g0838 858 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 304 840 - -
Ssu8g0838 858 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 15 299 - -
Ssu8g0838 858 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 304 840 - -
Ssu8g0838 858 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 299 - -
Ssu8g0838 858 Pfam S-locus glycoprotein domain 237 299 IPR000858 GO:0048544
Ssu8g0838 858 SUPERFAMILY Protein kinase-like (PK-like) 606 831 IPR011009 -
Ssu8g0838 858 SMART serkin_6 623 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0838 858 Gene3D - 18 154 IPR036426 -
Ssu8g0838 858 Pfam Protein kinase domain 624 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0838 Ssu-Chr8 14071477 14075354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0838 543 840 Receptor kinase-like Gene Family AT4G05200 50.820 2.14e-98 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g0838 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0838 - - gmx:100807185 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0838 8 14071477 14075354 Ssu8g0838 8 14071477 14075354 ECH
Ssu8g0838 8 14071477 14075354 Ssu3g2205 3 71591336 71594159 PCT