Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0831 ATGTTAGCGAAAGCCCATAATAAAGGGGATGGATCTAAGTCCCTGGCTAAGATACTGGCAGGATGGAAAGAATATAATGCCCAGCTTGATTCCTGTAATGATGTGGATAAGCCGGTTCGCAAAGTTCCTGCCAAGGGATCAAAGAAGGGGTGTATGAAAGGTAAAGGGGGCCCTGAGAACTCGAGGTGTAACTACAGAGGTGTTAGGCAAAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCAAACAGAGGGAATAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCGTATGATGAAGCGGCGAGGGCAATGTATGGTTCTTGTGCCCGCCTCAACTTCCCAATGTTTCAGTTTCCAGTTTCTCTGAGGAATCTTCCAAGGATTCCCCAGTTGCAAAGCATTCTGGCTCCTCAATGGCAGTGTCTGCAAATACTGAGTCCATGA 465 0.4882 MLAKAHNKGDGSKSLAKILAGWKEYNAQLDSCNDVDKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPMFQFPVSLRNLPRIPQLQSILAPQWQCLQILSP 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0831 154 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Ssu8g0831 154 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 122 - -
Ssu8g0831 154 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Ssu8g0831 154 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Ssu8g0831 154 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Ssu8g0831 154 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Ssu8g0831 154 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 122 - -
Ssu8g0831 154 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Ssu8g0831 154 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Ssu8g0831 154 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0831 Ssu-Chr8 13937437 13937901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0831 8 142 AP2-EREBP Transcription Factor Family AT2G40350 54.422 3.58e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu8g0831 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0831 - - gmx:100499747 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0831 8 13937437 13937901 Ssu3g2211 3 71698567 71699163 PCT