Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0819 ATGGGCGATGGAGGCGTCGCATGCATGCATTTGCAGTATATTATGGAGAGGTTACCGAGTGCCGAGAAGACTGTTTGCGGAGGCAAGAGTGGGAATGGCTTCAATTCCAAGTTGCTCAAGTTTGCTGACAGCGAGCGGAGGAAGATGAAGGCGAGGAAGAGCGAATTGGGGTTGGACAGAGTGAGCAAGAGAGGAAGCAACGATGTTGAGAATGGGGAAGTTTGCGGGGGTGGTGGGGAGAAGGTGCAGAAGGAGGAAGTGGAGGAGGGTGAATTGGGCACTTTGAAGTGGCCCAGAAATAACCTGGAGAATGGGGAGTTCATGCCGGGGatgccgccgccgccgccgagGAGAGGCGAGATTGAAAATGGTGAGATTGTGAGTGAGAAGTGGAAAACAAGGGAGCTGGAGAAGGGAGACATTGGTTCTGGGAAATGGAGGAAAGAGGATGTGGAAAGAGGGGAGATAGTTCCCGAGAAGGGTGGTAGGAGAGGAGAAGCTGAGAGGGGTGAATATGGGTTGTGGAGAGGAGTAAAGGATGAAATTGAGAAGGGAGAATTCATTCCAGATAGATGGTATAAGGGAGATTATGATAACAGTAGAATCCGCAGGTACCATTCAGGTATGGACAAAGGGTGGAAAACTGAACGTGAACGTGAAAGTACACCTTCTTCTGGGAGATATACAGGTGATGACTTTTTTAGAAAGAAGGAATTGAATAGAAGTGGGGGTCAGCATGTTAAAAGTTCTCCTAGGTGGGAGGGTCAACAGCGGAGTGTAAGGATCAGTTCAAAGATTGTAGATGACGAGAAGAATGTGCACAGCAATGGTAAGGACCATACTCGGGATTACACTTCTGGAAGtcgcttgaagaggcttggcaATGATACTGACAGCTGTGAGCGGAAGCATTTAGCAGATTATGCTGGTTTGAAAAGCCGAAGGCTTTCCGATGATAGCTGTCGCCACGTTTATTCAGAGAACTATTCTCGTCGCTCTGTGGAACGGTCTTACAGAAATAATAATGCTACAAAACTATCAACAGACAAGTATTCTGGTAGGAATCATGAATCTTCTCTGCCCATCAGACCGGCTTATGACAGGCATGGACGCAGCCCTGGTCATTCTGAGCGGTCCCCACGAGACCGAGGCAGGTATTATGATCATAGAGATCGCACTCCAGTGCGTCGGTCTCCCTGTGGTCGTGACAGATCTCCATATAACCGGGTGAAATCCCCCCATGGGCGGGAGAGGTCTCCATATATGAGGAACTGGGATAGAAGTCGTCAGCATGATCATAAATTGAGAAGTCCAACGCGTGCTGAGCAGTCACCGCCAGATCGAAGTCGGCGTCATGATCGCAGGGACTGTACCCCAAATTTGGCAGAAGCATCTCCCCTTGAGCGAGCGAGGAAAGATGGTCACCAGGAATCAAGTTGTAAAACCTTATCAAGTGAAAAACATGTCTCCCAAAATAGTTGTAAGGATCATGAAGATAAGCAGATTCAAAGGGAGTCAAATTGTTCAAGTACAGAATCTCAAAGTGAAAAAAGTGTGCAAGATACCATTAAGTCTGTCGAGAAAGACATCTGCAGTCAACCTGTAAAGGAACAGCAGAGTTGCAGCCCAACTGTTAGCCACAAAGAATCTCCTCATTCTGAGCCACCTCCTGAGGAGCTGCCTTCGATGGAGGAAGATATGGACATTTGTGATACCCCTCCACATGTCCCTGTGGTGACAGATTTGTCATCAGGGAAATGGTATTACCTTGACTATGGTGGTGTAGAAAATGGGCCTACTAAATTGTGTGACATCAAGGTCCTTGTTGATGAAGGTGTACTAATGTCCGATCACTTTATCAAGCACTTAGATAGCGACAGGTGGTTAACAGTTGAAAATGCTGCGTCACCTTTGGCACCTCAGAGCTTTCCATCTATTGCGTCTGATACCATAACTCAACTGGTAAATCCTCCAGAAGCTCCTGGTAATATCTTGTCAGATACAGCTGATATTCTACAATCTACTCCTGAGAATCACCAGGAAATGCTAACCCCCTCGCTGCAGCCACTGGTATGCCCTAATGACAGTGTGTTTACATCTGAACTTTTGGAGGACCTCCACATTGATGAAAGAGTTAGAAATCTGTTGGAGGGTTACGATGTCACGCCTGGGATGGAACTTGAGGCCGTAAAAGAAGCGTTGCAAATGGATTTTGAAAATGCAAAAGGGGAGGGATTGGGAGACTTTGACGGTTTTCCTTGGAGTGTTTCCTGCCTTAGGGAAGATTGTGATTCAAGTACTGATTTAGCATCAAGAGATTCTGAGTCTCAGTTAAGTATGTCCTGTGATAAGGATAATGGACTTGCCTTTGGTATATCTAGTGACTGGTTTTCCACCCGATGGTCATGTAAAGGTGGTGACTGGAAGAGGAATGATGATGCCCAAGATAGATATTCTAGGAAGAAACTTGTCCTAAATAATGGTTTTCCATTATGTCAAATGCCAAAGTCTGGATGTGAAGATCCTCGTTGGCCTCAAAAAGATGACTTGTATTTTCCTTCTCAAAGCAGGAGGCTTGATCTCCCTCTGTGGGCTTTCTGTGCTGATGAGCGGGATGATTGCAGTGTTGTGAGTAGATCAGTTCAAAGCAAGCCTGCTTCTGTGAGAGGAGTGAAAGGCAACGTTCTTTCGGTGGTCAGGATAAATGCCTGTGTAGTTAAGGACCAGGGATCATTGGTCTTTGAGACACGCCACAAGACCCGGGGCAAGGAAAGACATCATTCAAGGTCAACACGGCCCTTCTCTTCAACCAGTGATAGCAAGAGATCATCAACTGAACAAGATTCTCAGTCAAAAGCTGTTAGTGATCAAGGTTCTTACCGGATCATGGAATTCATTAATGTCCCTAAAGACCATCTCTGTACTATCCGTGAGTTACAATTACATTTGGGTGACTGGTATTATCTTGATGGTTCTGGACGTGAAAGGGGGCCCTCATCATTTTCAGAGCTACAGTATTTAGTAGATCAAGGAATCATAAAAAAGCATAGCAGTGTGTTCAGGAAAAGTGATAAACTCTGGGTTCCTATTACCTCTACAACAGAAACTTCTGATGGCAGTCTCACGAGCCAGCATGAAAGCAGTTCAATATCTGGTGCATGCTCTGGTCTTCCATCAAAGCAAACTCAAGGTGTTTCATGTGGTGAACCTTACACAAATTCAAGTTTGTTTAACAGCTTACATTCTCAGTTTGTTGGTTATACTCGTGGGAAGCTACATGAACTGGTAATGAAATCATATAAAAGCCGGGAGTTTGCTGCAGCTATAAATGAGGTTTTAGATCCTTGGATCAATGCAAGACAACCAAAGAAAGAAAtcgaaaaacaaatatattggAAATCAGAAGGTGATGCGCATGCTGCCAAAAGGGCCCGGATGCTGGTTGATGATAGTGAAGATGACAGTGACTTGGAAGATGGTGATGTTACTACCGAGAAGGATGAACCCACTTTTGAGGATCTATGTGGTGATGCTACTTTCCCCGAAGAAGAAATTGGTATTACTGATTCTGATGTGGGAAGCTGGGGCCTTTTGGATGGTTGTGTGTTGGCACGGATCTTCCATTTTTTGAGATCTGATTTGAAGTCCCTTGTTTTTGCTTCAATGACTTGCAAGCGCTGGAGAGCTGCTGTAAGGTTTTATAAAGGAGTGTCAATGCAGGTCAATTTGTCATTCTTAGGTCATTTCTGCACCGATACCATGTTGTGGAACATTTTGAATGCTTATGAGAAAGACAAGATCAATTCTATAATTCTAAGGGGTTGTGTCAATATTACAGCTGACATGCTTGAGAAAATTCTTGTTTCATTTCCTGGTTTATTTACAATAGACATTAGAGGGTGCAACCAGTTTGGAGAGCTGACTCTTAAATTTGCCAATGTGAAATGGATCAAGAACCGCAGTTCACACTTGACTAAAATTGCAGAGGAGCCTCATAAAATTAGAAGCCTTAAACATATTACAGAGCAAACCTCATCTGTTTCCAAATCCAGCAGTTTAGGTATAGATGATTTTGGTCAATTGAAGGATTATTTTGACAGTGTGGATAAGAGGGATACCAAGCAATTATTTCGTCAAAACTTGTACAAGCGGTCAAAACTATACGATGCTAGAAAGTCCTCCTCCATTCTATCTAGGGATGCTCGTACAAGACGTTGGGCAATCAAGAAATCTGAAAGTGGTTATAAGAGGATGGAGGAGTCCCTTGCTTCAAGACTCAGGGAAATTATGAAGACAAACTCTTGTGACTTTTTTGTGCCCAAGGTTGCAGAAATTGAGGCCAAAATGAAAAGTGGTTATTACAGTAGCCGTGGGTTGAATTCTGTGAAAGACGACATAAGTAGAATGTGCTGTGATGCAATAAAAGTGAAGAATCGGGGTGATGCTAGTGACATGAATCATATTATCACATTGTTTATTCAGCTTGCAACCCAGCTGGAAGAGAGTTCTAAATCTGTGCATGACAGAAATGCGCTACTGAAATCATGGGACAATGACTTGCCTGCAGTGTCGTGCTCTACTTTGTCAAAGTATAAGAAGAGTAGATTGGTGAATGAAAGGAAGTATAAGAGTAATGGAACACATGGTGGTTTGGATATTGTGGAATATACCTCTGATCGAGAAATTAGGAGGCGCTTATCAAAGTTGAACAAGAAACCTATGGACTCAGAGAGTGAAACGTCTGATGATGATCTTGACAAGTCTTGTGAAGATGGCAAGAGTGACAGTGATACTACAACCTCTGACACTGAAAGTGATCGAGAAGCACATTCAGAAAGTTTAATTAGGGAGTCAAGAGGGGATGGATACTTTACGTCTGAGGAAGAGTTGGGTTTTATAACTGATGATCGAGAGTGGGGTGCTCGCATGACAAAAGCTAGTCTGGTTCCTCCAGTTACCAGGAAATATAAAGTCATTGATCAATATTGCATTGTAGCTGATGAGGAGGATGTGCGAAGAAAGATGAGGGTTTCATTACCAGATGACTATGCTGAGAAGCTGAGTGCACAAAAGAATGGCACTGAGGAGTCAGATATGGAACTTCCTGAAGTAAAAGATTACAAACCTAGAAAGCAGCTAGGAAATGAGGTTATCGAGCAAGAAGTTTATGGAATTGATCCTTATACACACAATCTTCTGCTTGATTCTATGCCAGAGGAGTTAGATTGGTCTCTGCAGGAGAAGCATTTGTTTATAGAAGACATACTCCTTCGAACATTGAATAAGCAAGTAAGGAATTTTACTGGAACTGGAAGCACTCCAATGAGCTACCCTTTGCGGTCTGTTATTGAAGATATTAAAAGACATGCTGAGGAGGATTGTGATGCAAGAATGGTTAAAATGTGTCAAGGTATTCTAAAGGCCATAGACAGTCGTCCAGATGACAAATATGTAGCTTATCGGAAgGGGCTTGGTGTTGTTTGCAACGAGGAAGAAGGCTTTGCCGAAGATGATTTTGTTGTGGAGTTTTTGGGAGAGGTTTATCCTGTGTGGAAGTGGTTTGAGAAACAAGATGGGATTCGATCTCTGCAGAAAGATAGTAAAGATCCAGCGCCAGAATTCTATAACATCTACCTTGAGAGGCCAAAGGGTGATGCTGATGGGTATGACTTAGTTGTCGTTGATGCCATGCACATGGCTAATTATGCCAGTCGAATATGTCATTCTTGCCGACCTAATTGTGAAGCCAAGGTTACTGCTGTTGATGGTCAATATCAAATTGGTATTTATAGTGTTCGTAAAATTCAACATGGTGAGGAGATCACTTTCGACTACAATTCTGTAACAGAGAGCAAGGACGAGTATGAAGCATCAGTTTGTTTGTGTGGAAGCCAAGTATGCCGGGGGAGCTATCTTAATCTGACTGGTGAAGGGGCTTTCCAAAAGGTTCTGAAGGACGCTCATGGAATTCTCGATCGGCATTATTTGATGCTAGAAGCTTGTGAATTAAATTCCGTGTCTGAAGAGGACTATAATGACCTGGGAAGAGCTGGTTTAGGCAGTTGTTTGCTTGGAGGCCTGCCAGATTGGCTTGTTGCTTATGCAGCTCGCCTTGTGAGATTCATCAATTTTGAAAGAACAAAACTTCCTGAAGAAATTCTAAAGCATAATctggaagaaaaaagaaaatatttttcagatATATGTCTTGAAGTTGAAAGGAGTGATGCCGAGGTTCAGGCTGAGGGTGTGTACAACCAAAGGCTTCAGAATCTTGCTGTCACTCTTGATAAGGTAAGGTATGTTATGAGATGTATTTTTGGTGATCCACGGAAAGCACCACCTCCTCTTGAGAAGCTCAGTCCTGAAGCAACTGTTTCCTTCCTCTGGAAAGGAGAGGGTTCATTTGTTGAGGAGCTTCTTCAGTGCATAGCTCCTCATGTTGGAGAAGACATCTTGAATGATCTCAAGTTTAAAATTCATGCTCATGATCCTTCAAATTCTGGAGATATTCAAAAAGAGCTTCGGAAATCTCTGTTATGGTTGAGGGATGAGGTCCGGAATCTTTCTTGTACATATAGTTGTCGGCATGATGCTGCTGCTGACTTAATCCATATTTATGCTTATACCAAGTACTTCTTTAGAGTACGGAATTATCAAACCATTACGTCACCACCTGTCTATATTAGTCCACTTGACTTAGGTCCCAAGTACACTAACAAGTTGGGAGCAGAATTTCAGGAGTATCGAAAGATATATGGTGAAAATTATTGTTTAGGGCAGCTGATATTTTGGCATAACCAGAGTAATGCAGATCCAGATCACAGCCTGGCTAGAGCCAGCAGGGGTTGTTTGTCTTTACCAGATATCAGTTCCTTTTATGCCAAGGCTCAGAAGCCATCACGGCATTGTGTTTATGGTCCAAGGACTGTCAGATCTATGCTGGCAAGAAtgGAGAAGCAGCCGCAGAGATCTTGGCCCAAAGACCGGATATGGTCATTCAAAAGTTTTCCGAAATTCTTTGGTAGCCCGATGTTAGATGCTGTAGTAAATAACTCTCCACTGGACAGGGAGATGGTTCATTGGTTGAAGCACAGACATACCATATTCCCGGCCATGTGGGACCGTTAA 7131 0.428 MGDGGVACMHLQYIMERLPSAEKTVCGGKSGNGFNSKLLKFADSERRKMKARKSELGLDRVSKRGSNDVENGEVCGGGGEKVQKEEVEEGELGTLKWPRNNLENGEFMPGMPPPPPRRGEIENGEIVSEKWKTRELEKGDIGSGKWRKEDVERGEIVPEKGGRRGEAERGEYGLWRGVKDEIEKGEFIPDRWYKGDYDNSRIRRYHSGMDKGWKTERERESTPSSGRYTGDDFFRKKELNRSGGQHVKSSPRWEGQQRSVRISSKIVDDEKNVHSNGKDHTRDYTSGSRLKRLGNDTDSCERKHLADYAGLKSRRLSDDSCRHVYSENYSRRSVERSYRNNNATKLSTDKYSGRNHESSLPIRPAYDRHGRSPGHSERSPRDRGRYYDHRDRTPVRRSPCGRDRSPYNRVKSPHGRERSPYMRNWDRSRQHDHKLRSPTRAEQSPPDRSRRHDRRDCTPNLAEASPLERARKDGHQESSCKTLSSEKHVSQNSCKDHEDKQIQRESNCSSTESQSEKSVQDTIKSVEKDICSQPVKEQQSCSPTVSHKESPHSEPPPEELPSMEEDMDICDTPPHVPVVTDLSSGKWYYLDYGGVENGPTKLCDIKVLVDEGVLMSDHFIKHLDSDRWLTVENAASPLAPQSFPSIASDTITQLVNPPEAPGNILSDTADILQSTPENHQEMLTPSLQPLVCPNDSVFTSELLEDLHIDERVRNLLEGYDVTPGMELEAVKEALQMDFENAKGEGLGDFDGFPWSVSCLREDCDSSTDLASRDSESQLSMSCDKDNGLAFGISSDWFSTRWSCKGGDWKRNDDAQDRYSRKKLVLNNGFPLCQMPKSGCEDPRWPQKDDLYFPSQSRRLDLPLWAFCADERDDCSVVSRSVQSKPASVRGVKGNVLSVVRINACVVKDQGSLVFETRHKTRGKERHHSRSTRPFSSTSDSKRSSTEQDSQSKAVSDQGSYRIMEFINVPKDHLCTIRELQLHLGDWYYLDGSGRERGPSSFSELQYLVDQGIIKKHSSVFRKSDKLWVPITSTTETSDGSLTSQHESSSISGACSGLPSKQTQGVSCGEPYTNSSLFNSLHSQFVGYTRGKLHELVMKSYKSREFAAAINEVLDPWINARQPKKEIEKQIYWKSEGDAHAAKRARMLVDDSEDDSDLEDGDVTTEKDEPTFEDLCGDATFPEEEIGITDSDVGSWGLLDGCVLARIFHFLRSDLKSLVFASMTCKRWRAAVRFYKGVSMQVNLSFLGHFCTDTMLWNILNAYEKDKINSIILRGCVNITADMLEKILVSFPGLFTIDIRGCNQFGELTLKFANVKWIKNRSSHLTKIAEEPHKIRSLKHITEQTSSVSKSSSLGIDDFGQLKDYFDSVDKRDTKQLFRQNLYKRSKLYDARKSSSILSRDARTRRWAIKKSESGYKRMEESLASRLREIMKTNSCDFFVPKVAEIEAKMKSGYYSSRGLNSVKDDISRMCCDAIKVKNRGDASDMNHIITLFIQLATQLEESSKSVHDRNALLKSWDNDLPAVSCSTLSKYKKSRLVNERKYKSNGTHGGLDIVEYTSDREIRRRLSKLNKKPMDSESETSDDDLDKSCEDGKSDSDTTTSDTESDREAHSESLIRESRGDGYFTSEEELGFITDDREWGARMTKASLVPPVTRKYKVIDQYCIVADEEDVRRKMRVSLPDDYAEKLSAQKNGTEESDMELPEVKDYKPRKQLGNEVIEQEVYGIDPYTHNLLLDSMPEELDWSLQEKHLFIEDILLRTLNKQVRNFTGTGSTPMSYPLRSVIEDIKRHAEEDCDARMVKMCQGILKAIDSRPDDKYVAYRKGLGVVCNEEEGFAEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKDSKDPAPEFYNIYLERPKGDADGYDLVVVDAMHMANYASRICHSCRPNCEAKVTAVDGQYQIGIYSVRKIQHGEEITFDYNSVTESKDEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKDAHGILDRHYLMLEACELNSVSEEDYNDLGRAGLGSCLLGGLPDWLVAYAARLVRFINFERTKLPEEILKHNLEEKRKYFSDICLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPRKAPPPLEKLSPEATVSFLWKGEGSFVEELLQCIAPHVGEDILNDLKFKIHAHDPSNSGDIQKELRKSLLWLRDEVRNLSCTYSCRHDAAADLIHIYAYTKYFFRVRNYQTITSPPVYISPLDLGPKYTNKLGAEFQEYRKIYGENYCLGQLIFWHNQSNADPDHSLARASRGCLSLPDISSFYAKAQKPSRHCVYGPRTVRSMLARMEKQPQRSWPKDRIWSFKSFPKFFGSPMLDAVVNNSPLDREMVHWLKHRHTIFPAMWDR 2376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0819 2376 SUPERFAMILY F-box domain 1190 1232 IPR036047 GO:0005515
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 506 520 - -
Ssu8g0819 2376 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 1 2375 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 916 955 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 933 955 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 490 505 - -
Ssu8g0819 2376 SMART set_7 1812 1952 IPR001214 GO:0005515
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 79 93 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 49 143 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 335 355 - -
Ssu8g0819 2376 Gene3D SET domain 1790 1977 IPR046341 -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 1586 1620 - -
Ssu8g0819 2376 CDD SET_SETD2-like 1820 1968 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 532 549 - -
Ssu8g0819 2376 ProSiteProfiles SET domain profile. 1807 1946 IPR001214 GO:0005515
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 244 262 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 466 482 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 204 566 - -
Ssu8g0819 2376 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1957 2376 IPR045606 -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 263 334 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 1567 1620 - -
Ssu8g0819 2376 SUPERFAMILY SET domain 1821 1969 IPR046341 -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 204 243 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 49 67 - -
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 122 143 - -
Ssu8g0819 2376 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 1 2375 - -
Ssu8g0819 2376 Pfam SET domain 1887 1946 IPR001214 GO:0005515
Ssu8g0819 2376 MobiDBLite consensus disorder prediction 361 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0819 Ssu-Chr8 13412924 13427165 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu8g0819 SET 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0819 K22748 - gmx:100776205 4311.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0819 8 13412924 13427165 Ssu8g0819 8 13412924 13427165 ECH