Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0818 ATGTTTTCCGGCGATGGCTCCTCCGTGGACCCCATGTTCTCCGGCGTGAGCCTTCAGTCACTCCTCTCTCTGAACCCCTCCCTCTTCGCCGACGGGTTTCCCACCCTGGCCTCCGTCACCGAGGGCCCCACCATCCCCCAACCCCCCAACCTCACCCACCACAACAAACTCCTCGTCCCCAAAACTGAACCCCCCAACTTCCACCGGCTCCCGCAGCTCCGCTCCCCGGAGCAGCCCGACCCGAAGCGCCACCGCCTCGACTCCTCGGTGATCCCCCAGAGCAGCCTCGCGCGGCAGCGAAGACAGAAGCTGAGCGAGAAGACGCGGTGCCTGCAGAAACTAATGCCCTGGGACAAGAAAATGGACCAGGCCACGCTTCTCGAAGAGGCTTACAAATACGTCAAGTTCCTGCAGGCCCAGTTCCGCGTGCTCCAGTCCATGCCCTCTCGCGCCGCCCCCTTCCTCATCCCGCCCCACCTCCAAAACGGCGCCGTTTTCGGCGACCTGGAGAAGCTGAACCGGTGCCAGCTTCTACAGGTGCTCGTCAACTCCCCCGTCGCGCAAACCATGCTTTACTCCCAAGGCTTCTGCGTTTTCTCCCTCGAACAGTTGTCTCTGCTTCGGAAATTGTCCGAGAGGAggcagcagcaacaacaacaccaCCAACACGTGGCGGATCCTGCTTCCTCCAAAACTTTCTTCAACTAA 708 0.5946 MFSGDGSSVDPMFSGVSLQSLLSLNPSLFADGFPTLASVTEGPTIPQPPNLTHHNKLLVPKTEPPNFHRLPQLRSPEQPDPKRHRLDSSVIPQSSLARQRRQKLSEKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQFRVLQSMPSRAAPFLIPPHLQNGAVFGDLEKLNRCQLLQVLVNSPVAQTMLYSQGFCVFSLEQLSLLRKLSERRQQQQQHHQHVADPASSKTFFN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0818 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 137 IPR011598 GO:0046983
Ssu8g0818 235 MobiDBLite consensus disorder prediction 216 235 - -
Ssu8g0818 235 Pfam Helix-loop-helix DNA-binding domain 98 138 IPR011598 GO:0046983
Ssu8g0818 235 MobiDBLite consensus disorder prediction 60 98 - -
Ssu8g0818 235 SMART finulus 94 143 IPR011598 GO:0046983
Ssu8g0818 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 60 222 IPR045843 GO:0003700|GO:0006355
Ssu8g0818 235 Gene3D - 93 152 IPR036638 GO:0046983
Ssu8g0818 235 MobiDBLite consensus disorder prediction 221 235 - -
Ssu8g0818 235 PANTHER TRANSCRIPTION FACTOR BHLH117 60 222 - -
Ssu8g0818 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 155 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0818 Ssu-Chr8 13406909 13407616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0818 100 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 44.348 1.19e-24 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0818 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0818 - - aprc:113855910 279.256