Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0814 ATGACTTTCTCTTTACTCTTGCAACGGAAGATAAGGAACaaCATGGACATGAATTCCTCAGGTGTCTCCGGTTGGCTTTATGATTATGGCTTTGACATCTCTGTTGCTGGTGCTGACTTCGTGGCTGCAGATTCTTGTGGTTTCAGTTGGGTGCCTCAGAGCCACACCTTCAAGGGTCCTTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCCTGGAAAATAGTCCTTCAAAACGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCCATCTTGGAGCCCGGTAGGCTGCCCAAAACAGACAAAGGTGCAGTATTAAGCGATGCGGTTCGAGTGGTAATCCAATTAAGAAATGAAGCCGAGAGGCTGAAGGAAATGAATGATGAATTACAGGCAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGctgaaggaagagaaagaaaagttggaGCAGCAGGTAAAACTGGCAAATGTACAGCCTAGCTTCCTACCTCAAGCCCCAGCTGCTAAAGGACAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGCCCCCTGCTGCAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 735 0.4381 MTFSLLLQRKIRNNMDMNSSGVSGWLYDYGFDISVAGADFVAADSCGFSWVPQSHTFKGPSNMSLEMEYSLDSTVLENSPSKRLRTESCASGSKACREKLRRDKLNERFLELSSILEPGRLPKTDKGAVLSDAVRVVIQLRNEAERLKEMNDELQAKVKELKAEKNELRDEKNRLKEEKEKLEQQVKLANVQPSFLPQAPAAKGQVGSHKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0814 244 Pfam Helix-loop-helix DNA-binding domain 93 140 IPR011598 GO:0046983
Ssu8g0814 244 CDD bHLH_AtILR3_like 94 169 - -
Ssu8g0814 244 Gene3D arf6 gtpase in complex with a specific effector, jip4 140 191 - -
Ssu8g0814 244 Coils Coil 130 192 - -
Ssu8g0814 244 PANTHER BHLH TRANSCRIPTION FACTOR 18 244 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Ssu8g0814 244 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 18 244 - -
Ssu8g0814 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 140 IPR011598 GO:0046983
Ssu8g0814 244 Gene3D - 81 139 IPR036638 GO:0046983
Ssu8g0814 244 SMART finulus 95 146 IPR011598 GO:0046983
Ssu8g0814 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 156 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0814 Ssu-Chr8 13363116 13365221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0814 47 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.895 2.03e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0814 HLH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0814 - - gmx:100806838 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0814 8 13363116 13365221 Ssu8g0814 8 13363116 13365221 ECH