Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0812 ATGCTCTCCATCTTTCTCTGCCTCTTGACGTTCTCTCTTTCCCTCCAAGGAGGCAATTGTATGAGCCCCTTATTTCGTTTCTGCTTCAACCGCGAAAATTACACTGATTCTAGCCCTtatggtaccaacttaaaccaGTTGTTTGACCTGTTACACACCAAAGTTCCTCCTACTGGTTTTGGACTTGGTTCTATTGGACAAGGCATAGACAAGGTGAACGGTCtagccttgtgtcgtggtgatGTCTACGCCACAAACTGCATGTCTTGTGTCAATGAAGCAACCAAAAAGCTTCAAGAGCGGTGCCCAAACAAGAAGGGGGCAATAGTCTGGTACGACTACTGCCTTCTTAAGTACTCAAACGAATATTTCTTTGGTGAAATTGATGAGAAGAACAAGTTTTATATGGTTAACATCTACGACGTAGATGACCCCACTACTTTCAATGGCAAAGTGAATGAGTTACTAAGCAGCTTGTCTTACAATGCATCTCAAACTCCCATGTTATATGCCACAGGGGAAGTGCAGCTCGAAGAATCAAAAACATTGTATGGTTTGGCTCAGTGTACAAGGGACCTCTTTGGCCCTGCTTGTAAGAAGTGTCTTGACGATGCTATTAGTGAACTTCCAGATTGTTGTGACGGAAAGCAAGGTGGACGGGTCGTGGGTGGGAGCTGCTATGTTAGATATGAACTATACCATATTGTTGAGGCCTAG 717 0.417 MLSIFLCLLTFSLSLQGGNCMSPLFRFCFNRENYTDSSPYGTNLNQLFDLLHTKVPPTGFGLGSIGQGIDKVNGLALCRGDVYATNCMSCVNEATKKLQERCPNKKGAIVWYDYCLLKYSNEYFFGEIDEKNKFYMVNIYDVDDPTTFNGKVNELLSSLSYNASQTPMLYATGEVQLEESKTLYGLAQCTRDLFGPACKKCLDDAISELPDCCDGKQGGRVVGGSCYVRYELYHIVEA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0812 238 ProSiteProfiles Gnk2-homologous domain profile. 22 124 IPR002902 -
Ssu8g0812 238 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38 17 236 - -
Ssu8g0812 238 Gene3D - 22 124 IPR038408 -
Ssu8g0812 238 Gene3D - 131 234 IPR038408 -
Ssu8g0812 238 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38-RELATED 17 236 - -
Ssu8g0812 238 Pfam Salt stress response/antifungal 28 121 IPR002902 -
Ssu8g0812 238 Pfam Salt stress response/antifungal 144 233 IPR002902 -
Ssu8g0812 238 ProSiteProfiles Gnk2-homologous domain profile. 130 235 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0812 Ssu-Chr8 13358912 13359628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0812 1 233 Pollen Coat Proteome AT4G20670 38.272 4.68e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0812 - - pvu:PHAVU_005G112700g 410.994