Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0804 ATGGAACCTCTATGTGAGTTTTGTGGGGTTGTGAGAGCTGTGGTTTACTGCAAGCCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTACACTCTGCAAATTCTTTGTCTCGCAGGCATTCGCGTTCCCTCCTTTGTGATAAGTGCAATTCCCAGCCAGCGATGATCCGTTGCATGGATCATAAGTTGTCTTTGTGTCAAGGTTGTGACTGGAACCCAAATGACTGTTCTATATTGGGACATAGGCGCCTCGCGTTGAATTGTTACACTGGTTGTCCCTCTTTGGCTGAGTTTTCTAGGATTTGGTCCTTTGTGTTTGATGGTAATTCCTCATTTTGTGGTTGGGAATCGCTTGGTACTTTGCCAAAGAGCGAGAGCTGCACTAGCCAGTGTTTGGAGCAACCTGATCATAATGGCGGTTCCTTTGGTTTGGTGAGTGACAAGTTGGATGAAATTGAATCTTGTGTCAGATATGAACCTTGGATGGGGCAATCTCACATCATTCCATCAAATCCAAATTACACGCCCTACTGCAAAGATCaagcatttttctttcctcAAGACTTAAACCAGCCAAAGCTGCAGGAATGCCCTAATCTAGGAATTCATGATGGGGATGAACTCTGTGAAGGTCTCAATGTGGATGATGTTCAATTAAACTTTGAAAGTGCTGATGAAATATTTGGTTGTTCACAAGCTGCCACAAGATACCACCTTGAAGATGGAGGAATGGACTGCCTATTAATGGATAAAAACATATCAGTCACAGAATCTAGTTCACTTATTGAGAGTGCCATGGAGGCATCATCATCAATCCAACAAGATTGTGTGGCTTTTCAGTCATCCAGGACTGGTGGATCAGCTAGTGTGATGCAGGCTATCAACAGTAATACAAATTGTGCGCTCATGAATCTTAGCTGCCATAGAAACACCAGTCTGGGATTTCCCCAGGGTCAAGTTCATTCAAGCTTACCACTTCAATTACCCAACATTGTTGGTGAAAATAGTTCTACTGAATATCAAGACTGCAGGTTATCGTCAGTGTTTCTGCCAGGTGAATCCCCTTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAAGCTAAAATGAGatacaatgagaaaaagaaaactagaaCGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCTGATACAAGGAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGACCCTCTTGTGACAAGGGACATCTAA 1281 0.4208 MEPLCEFCGVVRAVVYCKPDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCNSQPAMIRCMDHKLSLCQGCDWNPNDCSILGHRRLALNCYTGCPSLAEFSRIWSFVFDGNSSFCGWESLGTLPKSESCTSQCLEQPDHNGGSFGLVSDKLDEIESCVRYEPWMGQSHIIPSNPNYTPYCKDQAFFFPQDLNQPKLQECPNLGIHDGDELCEGLNVDDVQLNFESADEIFGCSQAATRYHLEDGGMDCLLMDKNISVTESSSLIESAMEASSSIQQDCVAFQSSRTGGSASVMQAINSNTNCALMNLSCHRNTSLGFPQGQVHSSLPLQLPNIVGENSSTEYQDCRLSSVFLPGESPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTRDI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0804 426 CDD Bbox1_BBX-like 4 47 - -
Ssu8g0804 426 ProSiteProfiles CCT domain profile. 370 412 IPR010402 GO:0005515
Ssu8g0804 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 423 - -
Ssu8g0804 426 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Ssu8g0804 426 Pfam CCT motif 370 412 IPR010402 GO:0005515
Ssu8g0804 426 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 2 423 - -
Ssu8g0804 426 SMART bboxneu5 1 47 IPR000315 GO:0008270
Ssu8g0804 426 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0804 Ssu-Chr8 13260875 13263789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0804 1 420 C2C2-CO-like Transcription Factor Family AT3G21880 42.923 1.95e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu8g0804 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0804 - - gmx:100804738 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0804 8 13260875 13263789 Ssu8g0804 8 13260875 13263789 ECH