Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0800 ATGGAGTCCATTTGCCCTATTGAGTCGCGGTGTGCCACTGAAATCTCTGCTCTTCTCACTCCTCCCTCACCTCTTCAAGTTCAGGAATATTATCATAACCTTTTGTCTGCGAGAGAGTACAGTGGTGTCACAGTCAAACAGGATGGCAACTTAGGAAAAGGTTTATATGCAGACATGGACTTCAAAGAGGGGGAACTTGTTCTGAAGGACCCCATGTTTGTAGGGGTTCAACATTCCCTCAACaagATTGATTGTTTGGTCTGTAGCTTCTGCTTTCGTTTTATTGGTTCCATTGAACTTCAAATTGGAAGGAGGCTTTACATGCAACAACTAAGGGCCAATGAGAGTCATGGTTGTGATGTGGGAAACTCTTCAAAACACTGCCTTGAGATGGATTCATCTGATGAAGAGGAGAGCACTCAGCGATGTGCTTCTGGTAGTTCCAAAACTAAAGTTTCTCTTCCTGAAGGTGTTGTGGAATCATTAATGAATGGCCAATTGGTGTTGCCTTGCTCCGAGAAGTTCTCCTTGCTGCCAGCTGTTCCGTGTCCTGGTGGATGTGGAGAAGCTTACTATTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTTCCATTCTTTACTCTGTACTGGTGAGAGTTCTGATCCAGCTCATAGAGAGGCACTCCTTAAATTCATCAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAgGCTATTTCTTCTACCATGTTAAGGTACCGCAAGTTAAAGGCAATCAATGTTGAAGAGCAAGTGAAACACAATACATCTTGTGTTTCAAACCACCgtaatttatcttttcttttggaaGCTTGGAGGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGATTGTATTGCTTTGCCAGATGATGTTGATTCTTCTGATGAAGCTTCATTCAGGCTGCAAATAAAAGAGTTGGCATTTGAGTCTCTCCAACTTCTTAAGACAGCTATATTTGACAAGGAATGTGAGCCATTATTCTCCCTTGAAATCTATGGACATATCATCGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTAGAGGATTACTTTTTATACATTGATGATCTGACATATCCTAATAAGGAAGATGCTGAGAAAATTACACAACCAATTCTGGATGCTCTTGGTGAAGACTATTCTATTTGTTGCCAAGggactgCATTTTTTCCTTTGCAAAGCTGCATTAACCATTCCTGCTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAAAGACGGCCAAGCAACAATAATTGCACAGAGGTCCATTTGTAAAGGAGAAGAGATAACCATCTCATATGTCGATGAGGACCTTCCATTTGAAGAGAGACAGGCATCCCTTGCAGATTATGGTTTCAGATGCAGGTGTCCAAAGTGCATTGAAGAAGACCCATAA 1455 0.4103 MESICPIESRCATEISALLTPPSPLQVQEYYHNLLSAREYSGVTVKQDGNLGKGLYADMDFKEGELVLKDPMFVGVQHSLNKIDCLVCSFCFRFIGSIELQIGRRLYMQQLRANESHGCDVGNSSKHCLEMDSSDEEESTQRCASGSSKTKVSLPEGVVESLMNGQLVLPCSEKFSLLPAVPCPGGCGEAYYCSMSCAEADWESFHSLLCTGESSDPAHREALLKFIKHANETNDIFLLAAKAISSTMLRYRKLKAINVEEQVKHNTSCVSNHRNLSFLLEAWRPISMGHKRRWWDCIALPDDVDSSDEASFRLQIKELAFESLQLLKTAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLTYPNKEDAEKITQPILDALGEDYSICCQGTAFFPLQSCINHSCCPNAKAFKRDEDKDGQATIIAQRSICKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEDP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0800 484 Pfam MYND finger 181 210 IPR002893 -
Ssu8g0800 484 SUPERFAMILY SET domain 40 477 IPR046341 -
Ssu8g0800 484 Pfam SET domain 52 453 IPR001214 GO:0005515
Ssu8g0800 484 Gene3D SET domain 378 483 IPR046341 -
Ssu8g0800 484 Gene3D - 108 215 - -
Ssu8g0800 484 SUPERFAMILY HIT/MYND zinc finger-like 179 211 - -
Ssu8g0800 484 ProSiteProfiles SET domain profile. 41 454 IPR001214 GO:0005515
Ssu8g0800 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 483 IPR044237 GO:0008168
Ssu8g0800 484 CDD SET_SMYD 393 479 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu8g0800 SET 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0800 - - gmx:100803651 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0800 8 13206180 13212050 Ssu8g0800 8 13206180 13212050 ECH