Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0796 ATGGCTGATTCGGATCGCTCTTCCAGTGAAATTTCCACAGATTCTTCTGATTCAGGTAAGCGAGGCTCTTCCAAAGTTGAATTTTCTGAAGATGAGGAAACTCTTATCATCAGGATGTATAAACTGGTTGGGGAGAGGTGGTCTTTAATTGCTGGAAGAATTCCTGGAAGAACAGCAGAGGAAATAGAGAAGTATTGGACTTCGAGATCCTCAGGTTCTAGTGGATGA 228 0.4254 MADSDRSSSEISTDSSDSGKRGSSKVEFSEDEETLIIRMYKLVGERWSLIAGRIPGRTAEEIEKYWTSRSSGSSG 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0796 75 MobiDBLite consensus disorder prediction 1 19 - -
Ssu8g0796 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 73 - -
Ssu8g0796 75 SUPERFAMILY Homeodomain-like 25 68 IPR009057 -
Ssu8g0796 75 SMART sant 24 72 IPR001005 -
Ssu8g0796 75 CDD SANT 27 66 IPR001005 -
Ssu8g0796 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 74 IPR017930 -
Ssu8g0796 75 Pfam Myb-like DNA-binding domain 25 67 IPR001005 -
Ssu8g0796 75 Gene3D - 27 69 - -
Ssu8g0796 75 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Ssu8g0796 75 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 73 - -
Ssu8g0796 75 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0796 Ssu-Chr8 13147201 13148352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0796 16 75 MYB Transcription Factor Family AT5G14750 50.000 2.26e-16 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu8g0796 Myb_DNA-binding 8.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0796 - - gmx:100801532 121.324