Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0794 ATGAACGACCTTCTCACTGATTCATTTGTTGGTGAGGCTAGTAATGGTCAGCCTTCTAGACAAAGTGATATTGAAATGGGACAGGTCCCAAGAAGCAACTCCGATATGGGAATGGAAGCTTTGAATAAGCAGGTGCAGGAAGCTGATAAAGAAATCGATAAGCTGTCTGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGATTCGAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAACAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCACAGGGtgtcaaaacaaaaatagaggCTATAAACCAAGATAACCTATCCAATAGACAAAAGCCTGGCTGTGAGAAGGGAACAGGTATTGACAGAGCAAGAATGAATATGACAAATGCCTTGACTAAAAAATTCAAGGATCTCATGACAGAGTTccagACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATTGATCGCCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGGGGACAGGTTGTAAACACAGTAGAAGAAATTCAGGAGAGACATGATGctgtaaaagaaattgagaaaaaactTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGGTGACAAACGCAACTGATCATGTGAGACTGGGTAACGAAGCTCTCCAAACTACAAAAAGTTTGCAAAAGAAATCAAGGAAATGCATGATGATTTCCATTATATTGCTCCTGGTCATTGCCATCATTATCGTACTCGCTGTTTTGAAACCATGGAAGAAGTAA 918 0.3813 MNDLLTDSFVGEASNGQPSRQSDIEMGQVPRSNSDMGMEALNKQVQEADKEIDKLSVLLQKLKEANEDSKAVTKASAMKAIKNRMEKDIDEVGKIAQGVKTKIEAINQDNLSNRQKPGCEKGTGIDRARMNMTNALTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDRLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVTNATDHVRLGNEALQTTKSLQKKSRKCMMISIILLLVIAIIIVLAVLKPWKK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0794 305 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Ssu8g0794 305 CDD SynN 38 195 IPR006011 GO:0016020
Ssu8g0794 305 SMART tSNARE_6 203 270 IPR000727 -
Ssu8g0794 305 Pfam Syntaxin 42 243 IPR006011 GO:0016020
Ssu8g0794 305 Gene3D - 201 301 - -
Ssu8g0794 305 MobiDBLite consensus disorder prediction 1 38 - -
Ssu8g0794 305 Pfam SNARE domain 244 296 IPR000727 -
Ssu8g0794 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Ssu8g0794 305 PANTHER SYNTAXIN 10 299 IPR045242 -
Ssu8g0794 305 Coils Coil 38 72 - -
Ssu8g0794 305 CDD SNARE_syntaxin1-like 207 269 - -
Ssu8g0794 305 SMART SynN_4 33 159 IPR006011 GO:0016020
Ssu8g0794 305 Gene3D - 33 162 - -
Ssu8g0794 305 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0794 Ssu-Chr8 13128933 13136531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0794 1 303 SNARE and Associated Proteins AT3G03800 60.726 5.14e-121 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0794 K08486 - gmx:100800991 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0794 8 13128933 13136531 Ssu8g0794 8 13128933 13136531 ECH