Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0791 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCATCGATGATTGGAAGAAACGGCAACGTTGGTGGTTTTGGATTATCTTCAGGGCTCTCTCTTGGCCAGATTGAAAACCATAAGGCTTCGGAATCTCAAAGATCTGTAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAGCTCCACCCACTGGACATGCCTCAGAACACCTCAGAGAGCGATGTCCCTAGAATCCGCGAAGATGATTTTGACAGTGCAACCAAGTCAGGAAGTGAAAACCAAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAAATGGAAGCtTTCTTTAAGGAGTGTCCGCATCCTGATGACAAGCAAAGGAAGGAACTGAGTCGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAATTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACCCAACATGAGCGTCATGAGAACACACAGCTCAGAACTGAAAACGAGAAGCTTCGAGCGGATAACATGAGGTTCAGGGAAGCTCTCAGCAATGCCTCGTGTCCTAACTGTGGCGGACCAACCGCTATAGGGGAAATGTCGTTCGATGAGCATCACTTGAGGCTCGAAAATGCTCGCCTGAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCAAAGTACGTGGGAAAGCCTGTGGTGAGCTATCCACTTCTTTCTCCTTCATCTGTTCCTCCTCGTCCACTGGAGCTTGGGATTGGTGGTGGTTTTGGTGGCCAGGCTGGAGGCATTGGTGGTGAGATGTATGGTGGAGCTGTAGGAGATCTTCTTAGGTCAATCAATGGGCCAACTGAAGCTGATAAGCCCATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCGCAAATGGGTGAGCCTCTTTGGTTGACTACCCTGGATGGCACCACCACTGTGCTCAACGAGGATGAGTACATCAGGTCCTTTCCTCGAGGGATTGGTCCTAAACCCGCCGGTTTCAAGTGTGAAGCTTCTCGAGAAACTGCTGTTGTTATCATGAACCATGTTAACCTCGTCGAGATTCTCATGGACGtgAACCAATGGTCCACAGTGTTCTCTGGCATCGTCTCAAGAGCAATGACTTTAGAAGTGTTATCAACAGGGGTGGCCGGGAACTACAACGGTGCATTGCAAGTgATGACAGCAGAATTACAAGTACCTTCACCTCTTGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAGCACGGTGACGGGACTTGGGCAGTAGTGGATGTGTCCTTGGATAATTTGCGTCCTAGTCCTTCAGCGAGATGTAGAAGAAGGCCCTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTATTCAAAGGTCATATGGGTTGAGCATGTAGAAGTGGATGACAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGCTCTGGGCATGCATTTGGTGCAAAACGTTGGATTGCAACCTTGGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACCGTAGATGTTGGAGtgatAACAAACCAAGATGGGAGGAAGAGTATGTTGAAACTGGCCGAGAGAATGGTTATAAGCTTTTGCGCTGGAGTGAGTGCATCTACTGCACACACATGGACAACACTTTCTGGAACTGGGGCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTAGATGACCCAGGTAGGCCTCCTGGCATCGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTGTCACCAAAAAGGGTTTTTGAATTCCTACGTGATGACAACTCCAGAAGTGAGTGGGATATTCTTTCAAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCGAATGGACGAGACACCGGAAATTGTGTCTCCCTACTTCGGGTGAATAGCGCGAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCGCGGACTCAACGGGGTCATTTGTTATATATGCCCCTGTAGATATTGTGGCTATGAACGTAGTTCTGAATGGAGGGGACCCAGACTATGTGGCCCTTCTCCCTTCAGGATTTGCTATTCTCCCAGATGGAACCACTGCACATGGAGGTGGCATTGGTGACACGGCACATGGTGGATCTCTCTTGACCGTGGCCTTCCAAATATTGGTTGATTCAGTTCCAACGGCAAAGCTTTCTCTTGGATCTGTTGCTACCGTTAACAATCTCATTGCATGCACTGTTGAGAGAATTAAGGCTGCTTTGTCTGGTGAAGTTGCTTGA 2346 0.4795 MPAGIMIPARNMPSMIGRNGNVGGFGLSSGLSLGQIENHKASESQRSVEMFQPNLMEAGQLHPLDMPQNTSESDVPRIREDDFDSATKSGSENQEGASGEDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGGFGGQAGGIGGEMYGGAVGDLLRSINGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDDNSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGDTAHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0791 781 ProSiteProfiles START domain profile. 293 525 IPR002913 GO:0008289
Ssu8g0791 781 SMART START_1 302 522 IPR002913 GO:0008289
Ssu8g0791 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 778 IPR042160 -
Ssu8g0791 781 SUPERFAMILY Bet v1-like 293 524 - -
Ssu8g0791 781 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Ssu8g0791 781 Gene3D - 352 519 IPR023393 -
Ssu8g0791 781 SUPERFAMILY Bet v1-like 542 773 - -
Ssu8g0791 781 Coils Coil 171 191 - -
Ssu8g0791 781 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Ssu8g0791 781 SUPERFAMILY Homeodomain-like 95 165 IPR009057 -
Ssu8g0791 781 Pfam Homeodomain 108 163 IPR001356 GO:0003677
Ssu8g0791 781 Pfam START domain 303 522 IPR002913 GO:0008289
Ssu8g0791 781 Gene3D - 93 182 - -
Ssu8g0791 781 MobiDBLite consensus disorder prediction 82 116 - -
Ssu8g0791 781 CDD homeodomain 108 166 IPR001356 GO:0003677
Ssu8g0791 781 SMART HOX_1 106 169 IPR001356 GO:0003677
Ssu8g0791 781 CDD START_ArGLABRA2_like 297 521 - -
Ssu8g0791 781 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 63 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0791 Ssu-Chr8 13014679 13020178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0791 50 781 Homeobox Transcription Factor Family AT1G05230 79.133 0.0 1171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu8g0791 START 1.7e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0791 K09338 - gmx:100809556 1440.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0791 8 13014679 13020178 Ssu8g0791 8 13014679 13020178 ECH
Ssu8g0791 8 13014679 13020178 Ssu3g2242 3 72324719 72337908 PCT