Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0789 ATGGAGGTGCTGTGGGCCCCAAGGCATGGAAGAATGTGTGTGGGGAGGGTGTTGTTGCTCTTGGTTTTGTTGTTGTGGATTCCCACACAGGTGGTGGTGGGAAGGACAGGAACTACCGTCACAAACTCTACTACTTCTTCGACACCCAGAGTTTTGAGAGTTGGAGCTCTGTTTACTCTTGATTCCGTAATTGGAAGGTCGGCTAAACCTGCACTTATGGCGGCTTTCGATGATGTTAATGCTAATTCGAGCGTTCTCCCTGGTGTTAAACTGGAAGTTGTTTTACATGATACAAATTGCAGTGGGTTTGTTGGAACAATGGAAGCTTTGCAGTTGATGGAGGATGAAGTGGTTGCTGCTATTGGTCCACAGTCCTCTGGAATAGCCCATGTTATCTCTCATGTTGTCAATGAACTCCATGTACCTCTTGTTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTACTATCAGATGTATGCAATTGCAGACTTGGTTGATTACTATAGATGGAGGGAGGTAATTGCCATATATGTAGATGATGACAATGGAAGAAATGGAATTTCAGTACTGGGAGATGCTTTGGCAAAGAAGCGTGCGAAGATCTCTTACAAGGCTGCATTCCCTCCTGGTGCCCTCAAGAAAGACATCAGTGACTTGTTAAATGGAGTGAACCTAATGGAATCGCGGGTCTTTGTTCTGCATGTTAATCCTGATAAgggtttgaatattttttctattgctGAGAAGCTGGGAATGATGAACAGTGGCTATGTGTGGATTGCAACAGATTGGCTTGCTTCAGCACTTGATTCATTAGAGCCAGTTGATCCTAACACAATGAATCTCATACAAGGGGTGTTGGTTTTACGTCATCACACTCCTGATACTAATGAAAAGAAGAGTTTTCTCTCCAGGTTGAAGCGACTAAAAGACAAGAAGAATCCAAGCTTCAATTCCTATGCATTGTATGCATATGATTCTGTGTGGCTAGTAGCCCGTGCTCTTGATGCTTTTCTCAAAGAAGGTGGTGTGGTATCTTTCTCCTCTGACCCTAAGTTGCGGGACACAAATGGAAGCATGTTGCATTTAGAATCACTTCGTGTTTTTGAAGATGGCCCTACGTTTCTCCAGACAGTTTTGAGTACCAACTTCACTGGTCTGACTGGTCAAGTTCAGTTTGATATGGAAAAGAATAGAATTCATCCAGCATATGATATCTTGAATATTGGTGGATCTGGAATGCGGAGAATTGGTTATTGGTCTAATTACTCTGGTCTCTCAGTTGTGGCTCCAGAAATTTTGTATAAGAAACCACCTAACACTTCAACAAGCAGCCAGCAACTGTATGGTGTCATATGGCCTGGAGAAACTGCAGCCAAACCAAGAGGGTGGGTGTTCCCTAACAATGGAAAGCCACTGAGAATAGCAGTGCCTAACCGAGTAAGCTACTTGGAATTTGTGTCTAAAGACAGGAACCCCCCTGGAGTAAGAGGCTATTGCATTGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCACgagaatatatattatttggacATGGTGATAGAAATCCCAGCTATGATGACCTTGCTAGTCAGGTTATACTAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTCCCAAATAGGACAAGGTATTTGGATTTTACTCAACCTTACATGGAATCAGGCCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTTAAGCCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATCTTTGTGGGAACTGTTATATGGATTCTTGAGCACCGGCACAATCCGGAGTTCCGTGGGAGACCGAAGAAACAACTCATGACAGTCTGTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTAGGAAGATTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACGGTGCAGCAACTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAGGTActcaaccaattggaattcaaGAAGGGTCATTTGCACGGAAGTATTTGACAGAAGAACTCAATATACAACCATCAAGGATAGTTACGTTGAAAAATATGGAGGCATATATTGATGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTGTGGCCATTGTTGATGAGCTTCCTTATATTGAGATCTTAATGTCAAGTACCAACTGTAAGTTCAGAACGGTGGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACATGTCAACTGCCATTCTTCAACTCTCAGAGAACGGTGACCTGCAAAAGATCCATGACAAATGGCTTTTCAAACATGATTGTTCTGTTCAAGATAATGCAGATTCAAATGAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTGTCCTTGCTCTGACTGCATTCTCCATTAAAGTGCTCTGTCAATATAACAAATTCAGCCCAGAACCTGAGCTAGATGACCTGGAAAATTCACCAGATAGGGATGGgcatgaaaataaaaagctttCCCGAACCACTACCAGCTTCAGGGACTGGATCTATTTTGtggataagaaagaaaaagaaatcaaagatATAATTAGGCAGAAGAGTAAGAAAAGGAGACGCAGCCTGAGCTCAGATGGCCAACCTAGTTCACCCCCCTAA 2844 0.4174 MEVLWAPRHGRMCVGRVLLLLVLLLWIPTQVVVGRTGTTVTNSTTSSTPRVLRVGALFTLDSVIGRSAKPALMAAFDDVNANSSVLPGVKLEVVLHDTNCSGFVGTMEALQLMEDEVVAAIGPQSSGIAHVISHVVNELHVPLVSFGATDPSLSSLQYPYFVRSTQSDYYQMYAIADLVDYYRWREVIAIYVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGALKKDISDLLNGVNLMESRVFVLHVNPDKGLNIFSIAEKLGMMNSGYVWIATDWLASALDSLEPVDPNTMNLIQGVLVLRHHTPDTNEKKSFLSRLKRLKDKKNPSFNSYALYAYDSVWLVARALDAFLKEGGVVSFSSDPKLRDTNGSMLHLESLRVFEDGPTFLQTVLSTNFTGLTGQVQFDMEKNRIHPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLYGVIWPGETAAKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDRNPPGVRGYCIDVFEAAINLLPYPVPREYILFGHGDRNPSYDDLASQVILNNYDAAVGDVTIVPNRTRYLDFTQPYMESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFIFVGTVIWILEHRHNPEFRGRPKKQLMTVCWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAIVDELPYIEILMSSTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLFKHDCSVQDNADSNELSLSSFWGLFLICGIACVLALTAFSIKVLCQYNKFSPEPELDDLENSPDRDGHENKKLSRTTTSFRDWIYFVDKKEKEIKDIIRQKSKKRRRSLSSDGQPSSPP 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0789 947 Gene3D - 598 723 - -
Ssu8g0789 947 Pfam Bacterial extracellular solute-binding proteins, family 3 544 828 IPR001638 -
Ssu8g0789 947 PANTHER GLUTAMATE RECEPTOR 3.4 40 929 - -
Ssu8g0789 947 Pfam Receptor family ligand binding region 69 424 IPR001828 -
Ssu8g0789 947 CDD PBP1_GABAb_receptor_plant 53 444 IPR044440 -
Ssu8g0789 947 Coils Coil 915 935 - -
Ssu8g0789 947 SUPERFAMILY Periplasmic binding protein-like II 463 829 - -
Ssu8g0789 947 CDD GluR_Plant 485 828 - -
Ssu8g0789 947 SUPERFAMILY Periplasmic binding protein-like I 47 479 IPR028082 -
Ssu8g0789 947 Gene3D - 167 440 - -
Ssu8g0789 947 MobiDBLite consensus disorder prediction 925 947 - -
Ssu8g0789 947 Gene3D - 71 415 - -
Ssu8g0789 947 PIRSF IGluLR_plant 11 945 IPR017103 -
Ssu8g0789 947 Pfam Ligand-gated ion channel 829 860 IPR001320 GO:0015276|GO:0016020
Ssu8g0789 947 Gene3D - 482 597 - -
Ssu8g0789 947 SMART GluR_14 488 830 IPR001320 GO:0015276|GO:0016020
Ssu8g0789 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 65 81 - -
Ssu8g0789 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Ssu8g0789 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 125 153 - -
Ssu8g0789 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 929 - -
Ssu8g0789 947 Gene3D - 724 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0789 Ssu-Chr8 12992632 12997370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0789 16 795 Ion Channels AT1G05200 67.005 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0789 K05387 - gmx:100799912 1668.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0789 8 12992632 12997370 Ssu8g0789 8 12992632 12997370 ECH
Ssu8g0789 8 12992632 12997370 Ssu3g2246 3 72359188 72364144 PCT