Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0788 ATGAAGAAATTTATGGTTTTGTACCTAGTAACATGGATTTTGGTATGTGGTATTGCTCAGAGCGGAAGGCCTGCCAGCGTGAACATTGGTGCGGTTTTTGCTTTCGATTCGGTCATAGGTAGAGTTGCTAAGGAGGCTATGGAAATGGCAGTTTCTGATGTTAATGGTGACCCCACAGTTCTCAAGGGAACCAAACTCAACTTGATAATGAAGGATACTGTGTGCAATGCTTTTCTAGGAGCAATTGGAGGTGCCACCCCTGAACCTCAtcacttttgttgttgttctagTTTGTTTGGTCCTCGTGTGTATGTTGTTCATGTTAACCCTGATCCAAGGTTGAGAATTTTTTCCATTGCCCATAAACTTCAAATGATGGCCAAGGATTATGTCTGGCTTGTCACGGATTGGCTCTCGGCTACGCTAGATTCATTATCCCCAGTGAATCAGACCTCTTTCGGTGTTCTCCAAGGGGTTGTCGGTCTTCGTCAACACATTCCGGATTCCAGAAAAAAGAGAGCTTTTGTTTCTCAATGGATAAAAATGCAAGAAGGAGGAGTAGCAAATACTAGTTTGAGCTCCTATGGATTTTATGCTTATGACACAGTTTGGGCAGTTGCACGTTCAATCGATAAATTCATCAAAGTACACAACAATATTACATTCTCGCTCCGTGATAACTATAAGCTACCTCGTACAGAAGGAATTGGTATTCAGCTTGACAAGCTCAAAATCTTCGCTGGTGGATCTGATCTGGTCGACATATTATTACAATCAAATTTTACTGGTGTGAGTGGTCAACTTCAGTTTAATTCTGAAAGAAATATTGTAGGTGGTGGATATGATATTATCAATGTCAATCAGATGGCAATTACCAGGGTTGGTTTTTGGTCTAATTATTCAGGATTTTCAGTTGTACCCCCTGTAGCTCTTAAACAAAGGAAACATAACAGATTTTCCCAAGATCAGAAGCTTGGCAATATTACTTGGCCTGGTGGAAAGACAGAACGACCTCGTGGCTGGGTGATTGCTGATAATACCAAGCCACTGAGAATTGGAGTGCCAAAAAGAGCaagttttgttgaatttgtaaCTGAACTGCAAGATCATCAAATTCAGGGGTACTGTATTGATGTCTTCAAGAAAGCCCTAGAATTTATCCCATATGAAGTTCCTTTTGTATTCAAGCCTTTTGGGAATGGTAAAGCAAATCCCAATTATGATGCACTTGTGAAAATGATTGCTGAAAATGTATATGATGCGGTTGTTGGAGATGTAGCAATTGTGACAAACCGTACAAGGATTGTGGATTTTTCTCAGCCCTTTACATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAAAGCAAGATCAACTTGGGTCTTCCTCAAACCATTTACAGCAGATATGTGGTGTGTCACTGCTGCATCATTTATAGTGATTGGAGTGGTTATATGGATTCTTGAGCACCGAGTCAATAATGACTTCCGTGGTCCACCTAAGAAGCAAATTGTGACAATGTTAATGTTCAGCCTCTCGACACTGTTTAAGAAAAACCAGGAAAATACCGTAAGCTCACTTTCTAAAATGGTGATGATAGTCTGGCTTTTTCTATTGATGGTGATCACAGCTAGCTATACAGCGAGCTTGACGTCAATTCTTACAGTGGAGCAGCTTTCGTCGCCCATCACAGGAATTGATAGCTTAATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCATTTGCTTACAGCTATCTGGCAGATAATCTTTATGTAACAAGATCGAGACTTGTTTCCCTAGGCTCCCCTGAGGAATATGCTATGGCGCTGCGGAAGGGACCATACGGTGGAGGGGTGGCAGCTATCGTTGATGAGCTTCCATATGTCGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATTATCGGACAGCCATTCACCAGGAGCACTTGGGGATTTGCTTTTCGAAGAGACTCTCCTCTTGCTTTTGACATGTCTACAGCAATTTTGAAACTGTCTGAGAATGGAGATCTTCATAAGATACATGAGAAGTGGTTCTGTAAAATGGGTTGTCCTGAAGAAAGGACAAGCAACTCAAAGCCTGACCAGCTTCACTTGGTTAGCTTTTGGGGCCTGTATCTCTCATGTGGTGCCGTCTCTCTTGCTGCACTTGTGCTGTTTCTGTTGCAAACAATTCGCCAATACGCCCGCTTCAAACAAAGACAAAAGGATATTGCTTCTTCATCCTCAGAACCATCAGGCAGTCATTGTTCCCAGGTGGTTGTTAACTTCTTTAATTTCATTGATGAGAAGGAAGAGGCCATTAAGAAAATGTTCGCTCAATGTGACAATCATCACAACCCCAACTGA 2376 0.412 MKKFMVLYLVTWILVCGIAQSGRPASVNIGAVFAFDSVIGRVAKEAMEMAVSDVNGDPTVLKGTKLNLIMKDTVCNAFLGAIGGATPEPHHFCCCSSLFGPRVYVVHVNPDPRLRIFSIAHKLQMMAKDYVWLVTDWLSATLDSLSPVNQTSFGVLQGVVGLRQHIPDSRKKRAFVSQWIKMQEGGVANTSLSSYGFYAYDTVWAVARSIDKFIKVHNNITFSLRDNYKLPRTEGIGIQLDKLKIFAGGSDLVDILLQSNFTGVSGQLQFNSERNIVGGGYDIINVNQMAITRVGFWSNYSGFSVVPPVALKQRKHNRFSQDQKLGNITWPGGKTERPRGWVIADNTKPLRIGVPKRASFVEFVTELQDHQIQGYCIDVFKKALEFIPYEVPFVFKPFGNGKANPNYDALVKMIAENVYDAVVGDVAIVTNRTRIVDFSQPFTSSSLVIVAPINKARSTWVFLKPFTADMWCVTAASFIVIGVVIWILEHRVNNDFRGPPKKQIVTMLMFSLSTLFKKNQENTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLADNLYVTRSRLVSLGSPEEYAMALRKGPYGGGVAAIVDELPYVELFLSKETDFGIIGQPFTRSTWGFAFRRDSPLAFDMSTAILKLSENGDLHKIHEKWFCKMGCPEERTSNSKPDQLHLVSFWGLYLSCGAVSLAALVLFLLQTIRQYARFKQRQKDIASSSSEPSGSHCSQVVVNFFNFIDEKEEAIKKMFAQCDNHHNPN 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0788 791 Gene3D - 460 587 - -
Ssu8g0788 791 Gene3D - 636 695 - -
Ssu8g0788 791 SUPERFAMILY Periplasmic binding protein-like II 328 688 - -
Ssu8g0788 791 Pfam Receptor family ligand binding region 99 287 IPR001828 -
Ssu8g0788 791 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 81 - -
Ssu8g0788 791 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 96 789 - -
Ssu8g0788 791 Pfam Bacterial extracellular solute-binding proteins, family 3 350 688 IPR001638 -
Ssu8g0788 791 SUPERFAMILY Periplasmic binding protein-like I 100 342 IPR028082 -
Ssu8g0788 791 Gene3D - 25 83 - -
Ssu8g0788 791 Gene3D - 246 348 - -
Ssu8g0788 791 SMART GluR_14 351 690 IPR001320 GO:0015276|GO:0016020
Ssu8g0788 791 Pfam Ligand-gated ion channel 689 719 IPR001320 GO:0015276|GO:0016020
Ssu8g0788 791 CDD GluR_Plant 348 688 - -
Ssu8g0788 791 Gene3D - 98 194 - -
Ssu8g0788 791 PANTHER GLUTAMATE RECEPTOR 3.7 10 81 - -
Ssu8g0788 791 Gene3D - 349 459 - -
Ssu8g0788 791 SUPERFAMILY Periplasmic binding protein-like I 21 80 IPR028082 -
Ssu8g0788 791 PIRSF IGluLR_plant 1 85 IPR017103 -
Ssu8g0788 791 PIRSF IGluLR_plant 96 791 IPR017103 -
Ssu8g0788 791 PANTHER GLUTAMATE RECEPTOR 3.7 96 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0788 Ssu-Chr8 12982952 12987685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0788 9 84 Ion Channels AT2G32400 57.895 3.80e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0788 K05387 - gmx:100796389 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0788 8 12982952 12987685 Ssu8g0788 8 12982952 12987685 ECH
Ssu3g2246 3 72359188 72364144 Ssu8g0788 8 12982952 12987685 PCT