Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0778 ATGGCGAGAACAGTCTCCAACAACAGCAGCACCAACGATGAAACAGTGGACGAGACTAATGCAACAAGAGACGAGGGCGAGGTGAGAGGCCGCGTAAGGAAGGGGCCGTGGACCCCAGCAGAAGACGCGATCCTGATAGAGTACGTGAAGAAGCACGGTGAAGGGAGTTGGAACTCCGTGCAGAAGAATTCTGGGTTGTTAAGGTGCGGCAAAAGTTGCAGACTTAGATGGGCCAACCATCTCAGGCCTAATCTGAAGAAAGGTGCATTTtctcaagaagaagaaaaaatcatcATCGACCTTCATGCCAAGCTTGGAAACAAATGGGCCCGAATGGCCGCACagTTACCTGGTAGGACCGACAATGAAATAAAGAACTTTTGGAACACCAGAATGAAAAGGCGCCAGAGAGCAGGGTTACCCCTTTATCCTCCCGAAGTCCGGGCAGAAGCCACTGCATACCATCTACAACAAAACCGCTACTTGGAACAACAACCTCATTCatcttcatcattttctttaCTCCTATCATCTTGTTACCCCAAGAAGCTCAATGACCCAAACCAAACCCATCACTCCAATGCAACAAATCTGCTGCAAAACCAACCTGATTCTGCTAACTGTTACATTAATCCAAGCCAACAATTTAAGTTTTCCAATGAAAATAGTGGAAATGGAAATCTTGCTTTGCCATTATCCCCTCTTTCTCCGTATGGATCATCATCCTCCACTCTTCTTAACCACAGTTTTGCTCCTCGTAGTGGTTCTGCTGTAACTGATTCACGTGATTACCAAAGCTATGGTGATCATGGCTTCATAGGGGGATCTCCATATGAACCCTTTCCTTTGGTGCCAGGCTCCACCACAGAGATCTCTTCCAGCCAAACACCAACCCCTGCTTCATCCTATGCTAGTGGTGTTGATGGCTTGATGGGAGCTCAAGCATGGTTAATAATAATGACTACTATGAAGTTGCACCATTGCTCAAGGAAACAGTGGCCTGTTGGATGCTCTAGTGATGGAAGCTCAAGGACTTTCTCACAATGA 1047 0.4537 MARTVSNNSSTNDETVDETNATRDEGEVRGRVRKGPWTPAEDAILIEYVKKHGEGSWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGAFSQEEEKIIIDLHAKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVRAEATAYHLQQNRYLEQQPHSSSSFSLLLSSCYPKKLNDPNQTHHSNATNLLQNQPDSANCYINPSQQFKFSNENSGNGNLALPLSPLSPYGSSSSTLLNHSFAPRSGSAVTDSRDYQSYGDHGFIGGSPYEPFPLVPGSTTEISSSQTPTPASSYASGVDGLMGAQAWLIIMTTMKLHHCSRKQWPVGCSSDGSSRTFSQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0778 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Ssu8g0778 348 CDD SANT 36 81 IPR001005 -
Ssu8g0778 348 CDD SANT 89 130 IPR001005 -
Ssu8g0778 348 MobiDBLite consensus disorder prediction 1 16 - -
Ssu8g0778 348 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 15 302 - -
Ssu8g0778 348 MobiDBLite consensus disorder prediction 17 34 - -
Ssu8g0778 348 Gene3D - 89 135 - -
Ssu8g0778 348 SMART sant 33 83 IPR001005 -
Ssu8g0778 348 SMART sant 86 134 IPR001005 -
Ssu8g0778 348 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Ssu8g0778 348 Gene3D - 34 86 - -
Ssu8g0778 348 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Ssu8g0778 348 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Ssu8g0778 348 Pfam Myb-like DNA-binding domain 87 130 IPR001005 -
Ssu8g0778 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
Ssu8g0778 348 MobiDBLite consensus disorder prediction 1 34 - -
Ssu8g0778 348 SUPERFAMILY Homeodomain-like 31 128 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0778 Ssu-Chr8 12732176 12734033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0778 32 152 MYB Transcription Factor Family AT2G32460 82.645 1.26e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g0778 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0778 K09422 - gmx:100798860 460.685