Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0774 ATGGAGCTTCGTTCTCGTCGACGCCTTTCCAATCCCACAGTTTCTGGGAAGGAGCAGCAACCTAGGGATGATGCTGTTGGGGAAGATGAAGCTAATGGCCAGTGCGGTAACAATAAAGATAAAGGTGTTTCTGCTGTATCTACGGATTCAGATTTAGTTTCCGATCCTGATTCAGGTTCCGATTACGAAGATGAAGAGTTGGGTGGGAGCTTCCTACCTGACTTGAATGAAGAACCAGCTTCAAGCATTAGTGTTTCTGGTGGAGAAGATTGTGCTTCTGATTCATCTGATGGTGGCAAGCTTTCGTCCGAAAGGGGAAAGGCTCGGTGGTccagagagagaagaaaaagtttCAACACAGAAAATGGAGAACCAAGTGATGTGGTTAGAGTGGTGGAGTacaaagatgatgatgatgatgaatacTCAATGGCTCAGCAACAACCAGTTCCCTATGTTTCTAGGGGAACTAAGAAGAggaaatatacaaaaaaagcaaaaaatggagATTCTAAGCCAGTGTTGTTGTGGAATGCATGGGAAGAGGAGCAAGAGAGATGGATTGATAAGAATATATTAGAAGATGTTGACTTAGATAATCAGAGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTAACTGTGCCTTTACTAAGATACCAAAAGGAATGGTTAGCCTGGGCGTTGAAACAGGAAAGTTCTGCGACTAGAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCCCTTGTCCTTGCCAAACGTGAATTCCAACAAAGGAGTTGTGAACCAGATCAATCCATACCATGTTCATCCAGACTGTTGCCTGTGATCAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATCGCTTTACTTCAAAAGGAAGCACCAAGGTGCTGATTTATCACGGGGCTAATAGATGGAAGAGTGGGGATCGGTTTGCGGATTATGATTTTGTGATAACTACATACTCTGTTGTTGAGAGTGAGTACAGGAAGCATATGATGCCTCCTAAGGAGAGATGTCCATATtgtggaaaattatttttgccgAGTAAGTTGAATTATCATCAGAACTATTTTTGTGGACCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAgctaagaaaaagaatagagaagTTACTAAAGGGAAGACCAAAGAATGTGACAGTAACAAGATGTCAAAGGTTtctaacaagaaaaagaaagtggaaATGTGCATGATTATAGAAGATTCAGGGACTGTAGCTGTACCTGTGCGTATGGATAGGTCACTTCTACATGCTGTAAAATGGCAGCGGATCATACTGGATGAGgcACACTATATAAAATCTAGACATTGTAACACTGCTAAAGCAGTTCTTGCTTTAGAGTCTACCTACAAATGGGCGTTAAGTGGCACTCCCCTCCAGAACCGAGTTGGAGAGCTGTATTCTCTgATACGGTTCCTGCAAATAACTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGCTCTAAAGAATGTTCAGTCTGCACCCACAGTTCTGTGAGACATTTCTGTTGGTGGAATAAAtatGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGGAAAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAGGGATTGCCTGGATATTAAAGAGCAAGactattatgaatcattatACAATGAAAGTCAGGCACAATTTAATACATATGTTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGACTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTGCAGCAACAAGAAATGGAGTTGTGACAAATAATGCTACTGTTGAACAAGTTTGTGGCATTTGCCATGAGTCAGTAGAAGATCCTGTGGTTACCTCTTGTGAGCATGTATTTTGCAAGGCATGCTTGATAGACTTCTCTGCTTCCTTGGGACGAGTATCATGCCCCACATGCTCTAAATTACTTACTGTTGATTTAACATCCAGCAAGGATGTTGGGGATCAGGCtaataaaacaacaattaaaGGTTTCAGATCCTCAAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAATTAAGATTCATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAAACTACACTTTGCACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGACGCTGCCATTCAGAGATTCACTGAAGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCTGTGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCGATAAGAATTGTGAGGTTTGTCATTGAGAACACAATCGAGGAGAGAATTCTGAAACTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTtgagatttttatttgttaCCTAA 2793 0.3931 MELRSRRRLSNPTVSGKEQQPRDDAVGEDEANGQCGNNKDKGVSAVSTDSDLVSDPDSGSDYEDEELGGSFLPDLNEEPASSISVSGGEDCASDSSDGGKLSSERGKARWSRERRKSFNTENGEPSDVVRVVEYKDDDDDEYSMAQQQPVPYVSRGTKKRKYTKKAKNGDSKPVLLWNAWEEEQERWIDKNILEDVDLDNQSEVMNETAEAPSDLTVPLLRYQKEWLAWALKQESSATRGGILADEMGMGKTIQAIALVLAKREFQQRSCEPDQSIPCSSRLLPVIKGTLVICPVVAVTQWVSEIDRFTSKGSTKVLIYHGANRWKSGDRFADYDFVITTYSVVESEYRKHMMPPKERCPYCGKLFLPSKLNYHQNYFCGPDAVRTEKQSKQAKKKNREVTKGKTKECDSNKMSKVSNKKKKVEMCMIIEDSGTVAVPVRMDRSLLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAATRNGVVTNNATVEQVCGICHESVEDPVVTSCEHVFCKACLIDFSASLGRVSCPTCSKLLTVDLTSSKDVGDQANKTTIKGFRSSSILNRIRLENFQTSTKIEALREELRFMVERDGSAKGIVFSQFTSFLDLINYTLHKSGVSCVQLNGSMSLAARDAAIQRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0774 930 Gene3D - 600 928 IPR027417 -
Ssu8g0774 930 CDD DEXDc_SHPRH-like 219 521 - -
Ssu8g0774 930 MobiDBLite consensus disorder prediction 100 121 - -
Ssu8g0774 930 Pfam SNF2-related domain 234 653 IPR000330 GO:0005524|GO:0140658
Ssu8g0774 930 PANTHER BNAA08G28190D PROTEIN 147 927 - -
Ssu8g0774 930 SMART ultradead3 215 511 IPR014001 -
Ssu8g0774 930 ProSitePatterns Zinc finger RING-type signature. 691 700 IPR017907 -
Ssu8g0774 930 MobiDBLite consensus disorder prediction 388 414 - -
Ssu8g0774 930 MobiDBLite consensus disorder prediction 37 55 - -
Ssu8g0774 930 SUPERFAMILY RING/U-box 670 720 - -
Ssu8g0774 930 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 147 927 - -
Ssu8g0774 930 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 232 506 IPR014001 -
Ssu8g0774 930 CDD SF2_C_SNF 758 885 - -
Ssu8g0774 930 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 756 920 IPR001650 -
Ssu8g0774 930 Pfam Helicase conserved C-terminal domain 760 874 IPR001650 -
Ssu8g0774 930 Gene3D - 221 358 IPR038718 -
Ssu8g0774 930 SMART ring_2 676 715 IPR001841 -
Ssu8g0774 930 SMART helicmild6 791 874 IPR001650 -
Ssu8g0774 930 Pfam Zinc finger, C3HC4 type (RING finger) 676 715 - -
Ssu8g0774 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 578 IPR027417 -
Ssu8g0774 930 MobiDBLite consensus disorder prediction 1 129 - -
Ssu8g0774 930 MobiDBLite consensus disorder prediction 77 99 - -
Ssu8g0774 930 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 740 IPR013083 -
Ssu8g0774 930 MobiDBLite consensus disorder prediction 56 71 - -
Ssu8g0774 930 ProSiteProfiles Zinc finger RING-type profile. 676 716 IPR001841 -
Ssu8g0774 930 Gene3D - 381 597 IPR038718 -
Ssu8g0774 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 928 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0774 Ssu-Chr8 12618499 12625931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0774 149 930 RAD5 or RAD16-like Gene Family AT1G05120 67.551 0.0 1089
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu8g0774 SNF2_N 7.9e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0774 K15083 - gmx:100798333 1602.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0774 8 12618499 12625931 Ssu8g0774 8 12618499 12625931 ECH