Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0770 ATGAGGAAGGCTAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCTATGaTCACTGATGGGTGTCAATGGCGAAAGTACGGGCAGAAGATGGCCAAAGGAAACCCATGTCCCCGAGCATATTATAGATGTACCATGGCTGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAACAATACTCATCACGACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCGGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGCTGCTCTCAGGATCAATGTCAAGTGCTGATGGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCTTCTAGCATGGCGACTATCTCAGCATCAGCTCCATTCCCAACTGTTACATTGGACTTGACTCAGTCTCCAAACCCATTACAGTTCCCAAAGCCCACAAGCCAATTCCAAATCCCCTTCCCTGGTGTCCCTCAGAACTTTGCCAATTCCGCAGCCTCATTACTGCCTCAGATATTTGGCCAGGCACTGTATAACCAGTCCAAGTTTTCTGGCCTTCAAATGTCTCAAGATGCAGACCCTTCCCAATTGGGTAATCAATCTCAAAGGCCACCACCACACCTTGCTGACACAGTTAGTGCTGCCACTGCTGCCATTGCAGCTGACCCCAACTTCACTGCTGCTTTGGCAGCAGCCATCACTTCCATTATTGGGGGTGCACAGCCAAACAACAATACCAGTACTAGTAATAATGGCACCACATCGACCAACAACAGCAATGGCAATATTACATCAAGCAAcgataaataa 825 0.4812 MRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPTSQFQIPFPGVPQNFANSAASLLPQIFGQALYNQSKFSGLQMSQDADPSQLGNQSQRPPPHLADTVSAATAAIAADPNFTAALAAAITSIIGGAQPNNNTSTSNNGTTSTNNSNGNITSSNDK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0770 274 ProSiteProfiles WRKY domain profile. 12 78 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g0770 274 MobiDBLite consensus disorder prediction 243 274 - -
Ssu8g0770 274 Gene3D WRKY domain 2 79 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g0770 274 Pfam WRKY DNA -binding domain 19 76 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g0770 274 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 267 IPR044810 GO:0003700
Ssu8g0770 274 MobiDBLite consensus disorder prediction 192 212 - -
Ssu8g0770 274 SUPERFAMILY WRKY DNA-binding domain 10 78 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g0770 274 MobiDBLite consensus disorder prediction 192 214 - -
Ssu8g0770 274 SMART WRKY_cls 17 77 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g0770 274 PANTHER OS05G0567200 PROTEIN 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0770 Ssu-Chr8 12576386 12577550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0770 1 242 WRKY Transcription Factor Family AT4G04450 68.110 2.85e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu8g0770 WRKY 9.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0770 - - gmx:100127384 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0770 8 12576386 12577550 Ssu8g0770 8 12576386 12577550 ECH
Ssu8g0770 8 12576386 12577550 Ssu1g0907 1 20114792 20117100 ECH
Ssu8g0770 8 12576386 12577550 Ssu3g2269 3 72792403 72795435 PCT