Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0755 ATGGAGGGTGCTGGGATAGAAGAGAATAAcattaatgataacaataataagtcTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGACGCGTGTGATGATGCTTGTAGCATATGCCTTGAAGCTTTCTGTGATAGTGATCCTTCCACGGTGACGAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAGCGAAGCTCCCAGTGCCCTATGTGTTGGCAACCTATCAGTCTCAAAGATCCGACAAGCCAAGAATTGCTTGAGGCAgtggaaagagagagaaacttTAGGTTCAATCCATCTAGAAATGCAACAATATTTCATCATCCAACTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGTGCTAGTGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCAGCAGCGATGGGAAGAGCACGTCACATTGCTAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCccacattttttggttttttcaacTCATCCTAATTCACCTCCCATGGCTCCTGCTTCCTCCTCTCCATCTCAGAGGGGGGATGATGAACCAACTCCTACAATTGCTATTGCCAATCTGTCTCCAACTCCTTCAACCGGAGAAGAATCATCACAGCTGACTTTAGTTCCTCCTGTTCAAGCAGACCAGGTTTCTGCTTCAGGATCTGGATCTACTGCTCTTGCTACAGATCATCAGGGATCATCTTACAACAATAGGAGATCTCCTAATCATTCATCTCCAAGTAGTCAAGACAGAGCAGGGCCGTCAGAATTCCAGTCATTATCAGAATCTCTGAGATCTAAACTGAATGCTATGTCAACAAGATACAAGGAGTCAATTTCCAAGAGCACAAGAGGTTGGAAGGAGAGATGGTTCTCTCGTAACAACACTATGTCTGATCTTGGATCTGAAGGTAGGCGAGAAGTTGATGCAGGGATTGCAACTGTGTCACGCATGATGGATCGCCTGGAGACCAGAGACAATAATAGAAGCAATAGCAATTCAGCTCCAAGTAATTTAGAGGATGGTTCGGTTCAGGGATCCAATGATCAGCCTTTAACAGGCACTGAAGGGGACGGTCTTTTGAGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGTTCTAGTTCGAATTAA 1194 0.4347 MEGAGIEENNINDNNNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPASSSPSQRGDDEPTPTIAIANLSPTPSTGEESSQLTLVPPVQADQVSASGSGSTALATDHQGSSYNNRRSPNHSSPSSQDRAGPSEFQSLSESLRSKLNAMSTRYKESISKSTRGWKERWFSRNNTMSDLGSEGRREVDAGIATVSRMMDRLETRDNNRSNSNSAPSNLEDGSVQGSNDQPLTGTEGDGLLRDNNTKASCAAGSSSN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0755 397 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 397 - -
Ssu8g0755 397 MobiDBLite consensus disorder prediction 157 283 - -
Ssu8g0755 397 SUPERFAMILY RING/U-box 34 89 - -
Ssu8g0755 397 MobiDBLite consensus disorder prediction 185 201 - -
Ssu8g0755 397 SMART ring_2 41 81 IPR001841 -
Ssu8g0755 397 MobiDBLite consensus disorder prediction 339 397 - -
Ssu8g0755 397 MobiDBLite consensus disorder prediction 348 397 - -
Ssu8g0755 397 Pfam Ring finger domain 40 81 IPR001841 -
Ssu8g0755 397 MobiDBLite consensus disorder prediction 208 283 - -
Ssu8g0755 397 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Ssu8g0755 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 116 IPR013083 -
Ssu8g0755 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 13 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0755 Ssu-Chr8 12350814 12353990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0755 38 81 C3H Transcription Factor Family AT5G15790 50.000 5.40e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0755 K19043 - gmx:100780275 687.952