Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0752 atgtcaatggACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACACTCAGCTACAGAGACAGCACCTAAGCGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAATGCAAATCATTTGAGGCCGTAGACCATGATCAGCAGCCTAGGATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGAGGATGATACTCAAAAGTCTAACGGATTTtactga 543 0.4328 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQTFPSQDTQLQRQHLSVQEACSKELGSSSKCKSFEAVDHDQQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQEDDTQKSNGFY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0752 180 Gene3D High mobility group box domain 94 175 IPR036910 -
Ssu8g0752 180 SUPERFAMILY HMG-box 102 150 IPR036910 -
Ssu8g0752 180 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 180 - -
Ssu8g0752 180 Pfam YABBY protein 7 157 IPR006780 GO:0007275
Ssu8g0752 180 PANTHER PROTEIN YABBY 6-RELATED 3 180 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0752 Ssu-Chr8 12281979 12291621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0752 1 180 C2C2-YABBY Transcription Factor Family AT1G08465 66.129 8.05e-82 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ssu8g0752 YABBY 9.9e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0752 K25796 - gmx:100815973 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0752 8 12281979 12291621 Ssu3g2286 3 73085250 73092334 PCT