Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0747 ATGGGTGTCTCAGGGAAGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAGAATCTTCAGAGAAGGATGGAAATAAGGTTGGCAAGTTTCACCATCATAGAAGGCATgttgttgaatttgataatagTAAACTTCCAAACGAGTTGGATAATGATGCTACTCCACCTATTGGAGATGATAATGGCCATGCAAACCTTGATGCCCATTATTCATCTTCTTCTCAACAAGCACACGATGCTGCACATAATCAACAAACGAGGGAGGAATGGGCTGCAATATGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTGCGGGCTTTGAAAGGTGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTAAGAAAACAAGCCGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAAGCTCGTGTTCGGGCAAGGCGGGTTTGCATGGCATTGGAAACTCAAGCAGCACAACAGAAACTTCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGTGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGCTGAAGAAATTCAGgctaaaatattgaaaagacAGGAGGCAGCTGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGATTTGAACCAGATAAAAGTAGCTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCTTGGGAGAATCGCTTCGTTGACATTAATATCAAGGATGGAGTAACGGTAGATGAAAATGGAGCTATGGATGGTAAAAATGGAACCACACCTCAGTTGAGCTCTCTTAACAAGAAACCATTGTCATCAAACACTCATCCAAACCTGGCTAGTCAGGGAACTGGTCCCACTATTTCTGATGGCTGTGATTCTTCACCTAGTAAGACTGCAGGTTTGCTAGAATCATCAAACACAGAGCCTGTTAAGCCAACTTCTAAGGCAAATGTTGAAAATACTGTTGAAGAAGTTAACTCAAAACCTAGAATTGGATCAAGATCTCATAGTAATCCAAAGGAGAGAACATCACAGTCAGATAAGCAGGCCAAAAAACGATTATCTCTGCCTAACAATGCAGGGGGTGGTGCTGGATCTCAAACAATCAGCCATCCTATTAACACTAATGCGAAAGGGACGCTAAGCACGCAAAAGTCTAGTAGGGATAAACCTAAGCTCAATGGAAAAAGGGATGCGAATACAAAATCAGTTCCATTGCTCAATGGAAGAAAGGATGGGAACATAAGTACACGGATATGTAGTTTCGAGAATCTCAAATAA 1353 0.4242 MGVSGKWIKALVGLKKSEKPESSEKDGNKVGKFHHHRRHVVEFDNSKLPNELDNDATPPIGDDNGHANLDAHYSSSSQQAHDAAHNQQTREEWAAICIQTAFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMALETQAAQQKLQQNLANEARVREIEEGWCDSVGSAEEIQAKILKRQEAAAKRERAMAYALSHQWQAGSRQQPVSSGFEPDKSSWGWNWLERWMAVRPWENRFVDINIKDGVTVDENGAMDGKNGTTPQLSSLNKKPLSSNTHPNLASQGTGPTISDGCDSSPSKTAGLLESSNTEPVKPTSKANVENTVEEVNSKPRIGSRSHSNPKERTSQSDKQAKKRLSLPNNAGGGAGSQTISHPINTNAKGTLSTQKSSRDKPKLNGKRDANTKSVPLLNGRKDGNISTRICSFENLK 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0747 450 PANTHER IQ-DOMAIN 5-RELATED 2 396 - -
Ssu8g0747 450 SMART iq_5 113 134 IPR000048 GO:0005515
Ssu8g0747 450 SMART iq_5 90 112 IPR000048 GO:0005515
Ssu8g0747 450 MobiDBLite consensus disorder prediction 16 86 - -
Ssu8g0747 450 PANTHER IQ-DOMAIN 5-RELATED 2 396 - -
Ssu8g0747 450 MobiDBLite consensus disorder prediction 276 357 - -
Ssu8g0747 450 MobiDBLite consensus disorder prediction 69 84 - -
Ssu8g0747 450 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Ssu8g0747 450 MobiDBLite consensus disorder prediction 16 30 - -
Ssu8g0747 450 Gene3D - 92 133 - -
Ssu8g0747 450 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Ssu8g0747 450 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Ssu8g0747 450 MobiDBLite consensus disorder prediction 384 412 - -
Ssu8g0747 450 MobiDBLite consensus disorder prediction 270 438 - -
Ssu8g0747 450 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Ssu8g0747 450 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0747 Ssu-Chr8 12208023 12213337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0747 1 421 IQD Protein Family AT3G22190 54.545 1.16e-122 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0747 - - gmx:100781346 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0747 8 12208023 12213337 Ssu8g0747 8 12208023 12213337 ECH