Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0734 ATGGATGAAATTGATGTTCCTGCCCATTTCCTCTGCCCCATTTCCCTCCAACTCATGAGAGACCCAGTCACGGTTTGCACAGGAATCACCTATGATAGAGAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAACACATGCCCCGTTACAAAGCAGTGCCTATTGGACCATGATCTCACCCCAAACCACACTCTACGAAGGCTGATCCAAGCTTGGTGCACCCTCAATGCCTCACTTGGAGTTGAACGCATTCCAACTCCAAAGCCACCAATCGACAGAACTCAGATTGTGAAACTCCTCACCGAAGCAAAGAGGTTCCCAGAGAAGCAACTCAAGTGCCTCACAAGGCTTCGATCCATTGCTTTTGAGGGCCAAAGGAACAAAACATGTTTGGAGTCTGCAGGAGCAATAGACTTCTTGGCCTCAACCATGAAGAACAACACCCAAGAAGACTCAACTGTTCTCAGTGAAGCAGCTATTGAAGTCTTGTTTCACCTCAATCTTTCCGAATCTCAGCTTAAAGCTCTCATAAACAACGAGGGCATTCAGTTTACTGAGTCATTGTTTCACGTGTTGAGGCTTGGAAACTACCAATCTAGAGCCTATGCAACCATGCTACTGAGGTCAGCATTTGAGGTggctgatccaatccaattgaTCAGTGTCAAGACCGTGCTGTTTGTCGAAATCATGCGCGTGCTGCGTGATCAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTTGTTGTGGAGCTATTTCCGTGGGGCAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCAGTCCTCATTGAGCTACTTCTTGATGCCTCGGAAAGAAGGTCATGTGaacttattttaatagcttTGGATCAACTTTGTGGCTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGGGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTTTCCCATGTGGCAAGTGACAGAGGGGTTAGAATTTTGGCCTCCATTTGTAGGTATTCGGCCAATGCTAGAGTCCTTCATGAAATGTTGCAAGTTGGGGCCGTGTCCAAGTTGTGTTTGGTGCTTCAAGTGAATTGCAGTTTCAAGACTAAGGAGAGGGCCAAGGAGATACTCAAATTGCACTCCGCGGTTTGGAAGAGTTCCCCGTGTATTCCTGTACCTTTGTTATCTTCCTATCCTTGA 1209 0.4557 MDEIDVPAHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNNTCPVTKQCLLDHDLTPNHTLRRLIQAWCTLNASLGVERIPTPKPPIDRTQIVKLLTEAKRFPEKQLKCLTRLRSIAFEGQRNKTCLESAGAIDFLASTMKNNTQEDSTVLSEAAIEVLFHLNLSESQLKALINNEGIQFTESLFHVLRLGNYQSRAYATMLLRSAFEVADPIQLISVKTVLFVEIMRVLRDQISQQASKAALKLVVELFPWGRNRIKGVEGGAVSVLIELLLDASERRSCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCSFKTKERAKEILKLHSAVWKSSPCIPVPLLSSYP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0734 402 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Ssu8g0734 402 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Ssu8g0734 402 PANTHER WDSAM1 PROTEIN 1 402 IPR045185 GO:0061630
Ssu8g0734 402 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Ssu8g0734 402 SUPERFAMILY ARM repeat 97 380 IPR016024 -
Ssu8g0734 402 PANTHER OS11G0573500 PROTEIN 1 402 - -
Ssu8g0734 402 CDD RING-Ubox_PUB 10 53 IPR045210 -
Ssu8g0734 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Ssu8g0734 402 SUPERFAMILY RING/U-box 3 77 - -
Ssu8g0734 402 Gene3D - 95 388 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0734 Ssu-Chr8 12072959 12074167 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0734 2 402 U-box Gene Family AT2G35930 55.556 1.45e-164 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0734 - - gmx:100778012 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0734 8 12072959 12074167 Ssu8g0734 8 12072959 12074167 ECH
Ssu8g0734 8 12072959 12074167 Ssu3g2295 3 73282193 73283392 PCT