Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0733 ATGACAGAAATTGAAATTCCTCAATTTTTCGTTTGTCCCATTTCGCTTCAGATCATGGAGGACCCTGTGACAACCGTTACGGGCATAACATACGACAGAGAAAGCATCGAAAAGTGGTTGCTAAAAGCGAAAGATTGCACGTGTCCCGTTACGAAGCAACCATTGCCCAGAAACTCAGAGTTCTTAACCCCAAACCACACGCTTCGCAGGCTAACCCAACAGTGGTGTTCAGCAAACGCGGCAAACGGCGTTGAACAAATTCCGACCCCGAAATCACCTCTCAGCAATGCACACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCGTCGCTTCCGAAACGCATTGGAGAAACTGCACGCGCTTGCAACGGAGAACGAGAGGAACAGAAGGTGCATGGCTTCAGCGGGAGCAGCAGAAGCTATGGTGCACGTGATCACGAAGAGTTTCAAGCAGGGCAAAACGACGTCGTGCCTCGAAGAGGCTCTGAGAATTCTTCGCTTGCTTTGGAACCCCGCCAATATGGTCGACAACAGCAACATGAAGCGCATGGTTGGTGAAAACGTTGACTTTCTCAACTCGTTGACATGGGTTTTGCAACTTCGAACCAAGAACAGCGTCAAGGTAATAAACGAAGCAGTTCCTACATTGAAATTGGTAATTGAAGCCAAAGATTCAACCCCTTTAGGGAACTTAAAGCTTGAATTCTTCAAAGTCATAGTAAGTGTGATGAAAAATAGAGAACTCTCTCAACAAGCTCTTAAATCTGCGTTGCATGTGCTTATAGAAACGTGTCCTTTGGGGAGAAACCGGATGAAGATAGTGGAAGCGGGTGCAGTGGTGGAACTCGTTGAGCTTGCACTTGAAAAACCAGAAAAGAACCTAACAGAACTCGTATTTATCCTTCTGGCGAATCTGTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGCAGCATGCTGCAGGCATTGCTGTGGTTTCTAAAAGGATCCTTAGGGTTTCGCCAACCACCGATGATCGAGCTCTGCATATATTTTCCTTGGTTTCTAAGTTCTCGGCGTCGAATGAGGTTGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGACTGTGCTTCCCATTTGAAAGAAAAGGCACGCGGCATACTTAGGTTACACTCCAAAGCATGGAACAATTCTCCCTGTATTCAGGTTTATTTGTTAACCAGGGTCCAAAGGTGA 1242 0.467 MTEIEIPQFFVCPISLQIMEDPVTTVTGITYDRESIEKWLLKAKDCTCPVTKQPLPRNSEFLTPNHTLRRLTQQWCSANAANGVEQIPTPKSPLSNAHVEKLVKDLEVPRRFRNALEKLHALATENERNRRCMASAGAAEAMVHVITKSFKQGKTTSCLEEALRILRLLWNPANMVDNSNMKRMVGENVDFLNSLTWVLQLRTKNSVKVINEAVPTLKLVIEAKDSTPLGNLKLEFFKVIVSVMKNRELSQQALKSALHVLIETCPLGRNRMKIVEAGAVVELVELALEKPEKNLTELVFILLANLCSCADGREQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLVSKFSASNEVVQEMLRVGAVSKLCMVLQADCASHLKEKARGILRLHSKAWNNSPCIQVYLLTRVQR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0733 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 411 - -
Ssu8g0733 413 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Ssu8g0733 413 PANTHER WDSAM1 PROTEIN 3 411 IPR045185 GO:0061630
Ssu8g0733 413 SUPERFAMILY ARM repeat 110 390 IPR016024 -
Ssu8g0733 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Ssu8g0733 413 SUPERFAMILY RING/U-box 3 82 - -
Ssu8g0733 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Ssu8g0733 413 CDD RING-Ubox_PUB 10 53 IPR045210 -
Ssu8g0733 413 Gene3D - 99 405 IPR011989 -
Ssu8g0733 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0733 Ssu-Chr8 12049020 12050261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0733 3 403 U-box Gene Family AT2G35930 42.469 4.49e-107 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0733 - - gmx:100787419 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0733 8 12049020 12050261 Ssu8g0733 8 12049020 12050261 ECH
Ssu8g0733 8 12049020 12050261 Ssu3g2296 3 73325334 73326563 PCT