Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0730 ATGATAGAAAGTTTTTTTGTGTTGATTCCGTACAGAGTgactgagagagagagagcagaACGCAACATGGCGACGTACTTTCATGGAAGCACTTCGGAAATTCAATCTTCCGCAGATGGCTTGCAAACGCTTTACCTCATGAACCCAACGTACGTGCCCTACCCTGACGCGCCGCACCACCCAACGCTCCTCGTCAACGCGCCCAACGCCCTCAACCTCGCGAACCTCCCCCACGCGCCGCCGGTGTCGCCCAACCAACAGCAGCAGCAGCACGTGACTCACGGCGTGACAAACATCCTCGGATCCGGGAATTCCGATGATCACAGCCGACCGTCGTTGTTCGGGGAAAACATCGCCGCCTTCCACGGCTTCTCCGGCGGCGGAGCCACTGCCCCGCCTCGCGTTCACTATAACCTGTGGGGTTCGGTGGTGGACCAACCGGCGACGCCTCCTAGCAGCtccggcggcggcggcggtTTCCGGCGGCCGAGTCAGCAGGGGCTGTCGCTCAGCCTTTCGTCGCAGCAAACGGGGTATAGGTCGGTTTCCGGCGAGCTTGACGTTGCCGGACAGGGCCACGTCGCCGGAATCGGGAACTCTCCGACGTCGGCGGCGTCGACCGGAGCTGCGGGTGTTATTTTGGGGTCGAAGTATTTGAAAGCGACGCAGGAGCTTCTGGATGAAGTTGTTAATGTGGGGAAGGGAATCTACAAAGAGGAGAAATTCGCAAAGAAGGTGAAAGCGAGTAGGGAATCTACCAATTCTGGGGCTGGTGGTGACGGTTCAAGTGGAGGAGGAGAAAGCAGCGCAGGGAAACAAGTGGTTGAACTTAGCACTGCTCAGAGGCAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTCACCATGCTCGATGaggtAGAGCAAAGGTACAGGCAATATCACAACCAAATGCAAATTGTAATATCGTCATTTGAGCAGGCAACGGGTTATGGGGCGGCAAAATCTTACACGGCCCTTGCCCTAAAGACTATCTCAAAGCAATTCCGATGCCTTAAAGAAGCAATCTCTGCACAAATCAAAGCGACGAGTAAGACACTGGGTGAAGATGATTGCTTAGGAGTTAAGGTAGAAGGGTCGAGGCTTAGGTATGTTGACCACCATCTCCGGCAACAAAGGGCACTGCAGCAGCTAGGAATGGTTCAGCCCAATGCATGGAGGCCCCAGAGAGGCTTGCCTGAACGAGCCGTTTCCATCCTTCGCGCTTGGCTTTTTGAGCATTTCCTTCACCCCTATCCAAAGGACTCCGATAAAGTTATGCTTGCTAAACAAACTGGACTTGCTAGGAGCCAGGTGTCAAACTGGTTTATTAATGCCCGAGTTCGGCTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAGTGAAGGAGCATGAAGAAGCTAATGGTTCAGATAACACCAGATCAAAAGAATCGAGCAAGGAGTTGGGGTCAACGGCAAATGTTGCACCAGAATCACGTGCCATTAAACTCGATCATCTCCAATCAAAACAAGAAAGCTTCAACAACCAAAACACTTCCCAACCGAGATCTCAACAAACTCTTCAATGTCTCCCATGGGGGGATCCCTTCAATCCCACTCTGGTTTCCATCTTGCAGGATCATCTGACATGCAAAACAAACCAAGAAGTTCGGAAATGCAAAACTCACCAAGTAGTATCCTTTCAGTGGACATGGAAATGA 1722 0.5058 MIESFFVLIPYRVTERERAERNMATYFHGSTSEIQSSADGLQTLYLMNPTYVPYPDAPHHPTLLVNAPNALNLANLPHAPPVSPNQQQQQHVTHGVTNILGSGNSDDHSRPSLFGENIAAFHGFSGGGATAPPRVHYNLWGSVVDQPATPPSSSGGGGGFRRPSQQGLSLSLSSQQTGYRSVSGELDVAGQGHVAGIGNSPTSAASTGAAGVILGSKYLKATQELLDEVVNVGKGIYKEEKFAKKVKASRESTNSGAGGDGSSGGGESSAGKQVVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHNQMQIVISSFEQATGYGAAKSYTALALKTISKQFRCLKEAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMVQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEEVKEHEEANGSDNTRSKESSKELGSTANVAPESRAIKLDHLQSKQESFNNQNTSQPRSQQTLQCLPWGDPFNPTLVSILQDHLTCKTNQEVRKCKTHQVVSFQWTWK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0730 573 Coils Coil 282 309 - -
Ssu8g0730 573 Gene3D - 401 463 - -
Ssu8g0730 573 SMART prehox3 207 350 IPR006563 -
Ssu8g0730 573 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 536 - -
Ssu8g0730 573 MobiDBLite consensus disorder prediction 146 176 - -
Ssu8g0730 573 SMART HOX_1 398 462 IPR001356 GO:0003677
Ssu8g0730 573 ProSiteProfiles 'Homeobox' domain profile. 395 458 IPR001356 GO:0003677
Ssu8g0730 573 CDD homeodomain 398 459 IPR001356 GO:0003677
Ssu8g0730 573 SUPERFAMILY Homeodomain-like 399 464 IPR009057 -
Ssu8g0730 573 MobiDBLite consensus disorder prediction 247 273 - -
Ssu8g0730 573 MobiDBLite consensus disorder prediction 470 485 - -
Ssu8g0730 573 Pfam Homeobox KN domain 415 454 IPR008422 GO:0003677|GO:0006355
Ssu8g0730 573 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 29 536 - -
Ssu8g0730 573 MobiDBLite consensus disorder prediction 249 273 - -
Ssu8g0730 573 MobiDBLite consensus disorder prediction 470 495 - -
Ssu8g0730 573 Pfam Associated with HOX 212 349 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0730 Ssu-Chr8 12025795 12029066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0730 23 458 Homeobox Transcription Factor Family AT2G35940 51.464 4.82e-122 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu8g0730 POX 1.4e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0730 - - gmx:100779075 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0730 8 12025795 12029066 Ssu8g0730 8 12025795 12029066 ECH
Ssu8g0730 8 12025795 12029066 Ssu3g2299 3 73374805 73375578 PCT