Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0729 ATGGGGTTTTTGTTGAAAGAAACTTTGAAGACTCTGTGCGGTCGGAATCAGTGGTCTTATGCTGTGTTCTGGAAGATCGGTTGCAACAATTCCAAGCTATTAATCTGGGAAGAATGCTATTATGAACCACTGCCATGCCCTCCACGTATGTTTGGGATGCCTGATTTGCCTTACCAGAAGGGGGATGGATGCTGGTTTTCTTCGGAGTCTCAGTTGTCTCAGCTCGGGATTCAAGAGGAGGACCGAATCTGTTCTTTGATTAACAAAATGACAGTAAACAATTCAGTTATCATTGCAGGTGAAGGTATAATTGGACGGGCTGCATTTACAGGCAGCCATCAGTGGATTCTTTTGAACAATTTCACTAAAGATACATATCCACCAGAGGTATATGCTGAATTGCATCACCAATTTTCAGCTGGAATACAGaCAGTAGCAGTTATTCCTGTGCTTCCTCACGGGGTTGTTCAACTTGGTTCTTTCTTGCCTATAATTGAGAATATGGGATTTGTGAATGATGTTAAGAGCTTGATCTTGCATTTGGGATGCGTTCCTGGTGCCCTTCTATCTGAAGACTATTCAGCGAAACTTTCTGCTGAAAGACTTGCTGGACCTGCTATTACTGGTGTGCCTGTGTCTGTTGATCCACCTGTCATTACCTCAAATTGCACTCCCTCAGTAACTAATGGCTCCAATCAGCAAAGTAATTCATCTCATACTTCAAGGCCTTTTGTTCAAACACCTTGTCCTCTAAAGGCAGAGATAAATACTTGGCAGGGTTCTGCATTGACACCCCAAACCCGTAAACTGAACCAGATATCTAATAACCCTTGCCAACCAAAGTTTATTCCAGTAAGTAAAAGAAGCTTTGCTGGCCAACGAGAGAATAGAGTTGTGGAAGCTGAAGTGATACCCTCAAATCTTGATTCATGCCTGCAGCAGCATTCTGTTTCATATAATGCAAGATCTGCATTCAATAACTTAACTGGTTCTGGGTCTGTTGGCCAATCTGGTCTAAGTGAtgataatctaaaatatatggAACAACAAATCGTATCAGCCATTGGGAATCGAGATAATGTTAATCCTTGTATAAGTGCATCAAGTGCCTTAAACATGTCTCAACTAAGAACAGATGGAGGCCGTGTACTTGGCCAAAATCTGAGTTCTGGCAGTACTTCATTACTGGGGGGAATCCCAGTACATGGTGGGATGGGTACTCTTTTGAGGTCAAATCCGATTACTAGTTCTGGTTCAAAATCTCCTGAAGCATCCACAGCTCATTTATCTGGAGTAGAAGTTGGGATTGGACTTCAAAATTGTGATTCTTCAACTAAAGCAAGGGGTTGTTCTTTGGCAAATTTGACTAGTCAATCAAGCACCTTTCTCATGCATGTAGAATGTTCTGATGAGAAGATTCTCCCTGTAGATCTAAAGTGTGCTTCTTCGACAAATCAAAAGATAGACTATGATTTGCTTCAGGCCCCAAACTTCCCCTCTTTTCATGCTGAGGAGCATGTTCCCATTTGTGGTCAAATCCCTGGTTTTGCCCACGATTGCCTTCACAAAGATGGTAGTAGTCAATCTATGATGACAATGAATCCTAAACACAAACTATCTTGTGCTAAACCTCCATCAGGTGATGACCTGTTTGATGTTTTAGGGGTggatttgaaaaacaaattgcTGAATGGAAACTGGAATAAACTCTTTGTTGATGAATCAGATGCTAATGCGGAAGATATGGACAAAAAGGTTGCACCTATGAATATGCAGGGTACAACAACAAATCCTGATATTTATTCAGTTAAAGAAGCAATATCAGACTGTGGCATCTTTTCTGGGATGGGAACAGACCACCTCTTGGATGCTGTAGTCTCAAAGGCCAAATCTGTTGTGAAACAGGATTCCGATGACATGTCTTGCAGGACAACATTGACAAGGAATAGTACCTCCTCTGTTCCCTCTCCTGCCTGCAGGCCGGTTATGTCTGGTCATTTCCAAGGGGGATTGTTTGATTTTCCTAAGAATGGTGGTAAAAGAGGTGCTGTAGAAACTAGTTTTCTTAGGTCCAGATGTAACAAGGATGATGCTGGAAACTGTTCCCAAAGTAGTTCTGTTTATGGCTCTCAACTTAGTTCATGGGTTGAGAATAGTGGGAGTGTGAAACGTGAGAATAGTGTTTCAACTGGATACTCAAAGCGGCCAGATGAAGCTTGCAAACCAAATCGTAAAAGGATTAAACCAGGAGAGAATCCCAGGCCACGACCGAAAGATCGCCAAATGATTCAAGATCGAGTGAAAGAGTTGCGAGAAATTGTGCCAAACGGAGCAAAATGTAGCATAGATGCACTTTTGGAACGGACCATTAAGCATATGCTTTTCTTGCAAAGTGTGACAAAGCATGCTGACAAGCTGAAACAAACAGGGGAGTCTAAGATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGAGGGGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGCCCTATTATAGTTGAGGATCTGGATCCTCCTCGTCAGATGCTAGTGGAGATGCTTTGTGAGGAACGAGGTTTCTTTTTGGAAATCGCCGACTTAATCAGAGGATTAGGTTTAACCATCCTGAAGGGGGTAATGGAAGCTCACAATGACAAAATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACAAGGATGGAAATATTTATGTCACTTGTTCGTCTTTTGGAGCAAACGATGAAGGGCAATGCATCTTCATCCAATGCAATTGATAACATGATGGTGTATCACTCTTTCCCACAGGCTACTCAAATACCAGCAACTGGAAGGCCTAGTAGTTTGCAATGA 2880 0.4188 MGFLLKETLKTLCGRNQWSYAVFWKIGCNNSKLLIWEECYYEPLPCPPRMFGMPDLPYQKGDGCWFSSESQLSQLGIQEEDRICSLINKMTVNNSVIIAGEGIIGRAAFTGSHQWILLNNFTKDTYPPEVYAELHHQFSAGIQTVAVIPVLPHGVVQLGSFLPIIENMGFVNDVKSLILHLGCVPGALLSEDYSAKLSAERLAGPAITGVPVSVDPPVITSNCTPSVTNGSNQQSNSSHTSRPFVQTPCPLKAEINTWQGSALTPQTRKLNQISNNPCQPKFIPVSKRSFAGQRENRVVEAEVIPSNLDSCLQQHSVSYNARSAFNNLTGSGSVGQSGLSDDNLKYMEQQIVSAIGNRDNVNPCISASSALNMSQLRTDGGRVLGQNLSSGSTSLLGGIPVHGGMGTLLRSNPITSSGSKSPEASTAHLSGVEVGIGLQNCDSSTKARGCSLANLTSQSSTFLMHVECSDEKILPVDLKCASSTNQKIDYDLLQAPNFPSFHAEEHVPICGQIPGFAHDCLHKDGSSQSMMTMNPKHKLSCAKPPSGDDLFDVLGVDLKNKLLNGNWNKLFVDESDANAEDMDKKVAPMNMQGTTTNPDIYSVKEAISDCGIFSGMGTDHLLDAVVSKAKSVVKQDSDDMSCRTTLTRNSTSSVPSPACRPVMSGHFQGGLFDFPKNGGKRGAVETSFLRSRCNKDDAGNCSQSSSVYGSQLSSWVENSGSVKRENSVSTGYSKRPDEACKPNRKRIKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIINKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLDPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEAHNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTMKGNASSSNAIDNMMVYHSFPQATQIPATGRPSSLQ 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0729 959 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 747 796 IPR011598 GO:0046983
Ssu8g0729 959 MobiDBLite consensus disorder prediction 719 762 - -
Ssu8g0729 959 MobiDBLite consensus disorder prediction 737 762 - -
Ssu8g0729 959 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 959 IPR043561 GO:0003700|GO:0006355
Ssu8g0729 959 MobiDBLite consensus disorder prediction 719 733 - -
Ssu8g0729 959 MobiDBLite consensus disorder prediction 221 245 - -
Ssu8g0729 959 CDD bHLH_AtLHW_like 751 820 - -
Ssu8g0729 959 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 959 - -
Ssu8g0729 959 MobiDBLite consensus disorder prediction 221 246 - -
Ssu8g0729 959 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 177 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0729 Ssu-Chr8 11954416 11960554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0729 535 944 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.140 2.42e-120 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0729 - - gmx:100787748 1605.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0729 8 11954416 11960554 Ssu8g0729 8 11954416 11960554 ECH
Ssu8g0729 8 11954416 11960554 Ssu3g2300 3 73527211 73533198 PCT