Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0719 ATGGAGTCTCGGATGGATCATTACGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGCGCTGCGATTCTCGTAAACCACAAAGCGGAGAAGAAGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAGGAGATGGCTCTTATTGCTCGAATTCAGAACCCTTACATTGTGGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGTTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATggCTGCATTGATGAAAAAATCAAATGGGGTATACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAACTACTCTTGGCAGTGGAATACCTgcattcaaattttgttttacatcgTGACCTCAAGTGTTCCAACATCTTTCTTACCAAGGATCAAAATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTACCTCCCTGTTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAATCCTGAACATCGTCCAACAGCATCTGAAATCTTAAAACACCCTTATTTGCAGCCTTATGTTGATCAGTATCGTTCATCTTGCTGTACTCCAACAGCCTGTTCTCCTGAAAAGTCAATTTCAGCTGTCCATGATCCTCGAAAAAATTTGCCAGAAAGTCAAAACAGTAGTAGTTCAAGTACTGACAAAGATAGTTTGATGTCAAATGAGAAAAACACTGCAAAAGCAGTGCAAAAGCATGATAACAAAATCACTGAAATAGACCTGACATCAATTGAGGATGATGGCTCTGAGCATCTCCTGCCTGGTGAAGAGGAAATGGCTCCAGCAAAGTCAATGCCAAAACAGATGAGCTAG 1092 0.4194 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQNPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQNVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLQPYVDQYRSSCCTPTACSPEKSISAVHDPRKNLPESQNSSSSSTDKDSLMSNEKNTAKAVQKHDNKITEIDLTSIEDDGSEHLLPGEEEMAPAKSMPKQMS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0719 363 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Ssu8g0719 363 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0719 363 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0719 363 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 351 - -
Ssu8g0719 363 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 351 - -
Ssu8g0719 363 CDD STKc_Nek 7 262 - -
Ssu8g0719 363 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0719 363 Gene3D Transferase(Phosphotransferase) domain 1 90 338 - -
Ssu8g0719 363 MobiDBLite consensus disorder prediction 319 350 - -
Ssu8g0719 363 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Ssu8g0719 363 MobiDBLite consensus disorder prediction 285 363 - -
Ssu8g0719 363 SUPERFAMILY Protein kinase-like (PK-like) 4 311 IPR011009 -
Ssu8g0719 363 MobiDBLite consensus disorder prediction 293 318 - -
Ssu8g0719 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0719 Ssu-Chr8 11772605 11778173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0719 14 263 MAP Kinase Kinase Kinase AT1G53570 31.373 1.02e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Ssu8g0719 Pkinase 1.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0719 K08857 - gmx:100780141 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0719 8 11772605 11778173 Ssu8g0719 8 11772605 11778173 ECH
Ssu8g0719 8 11772605 11778173 Ssu3g2306 3 73667320 73673791 PCT