Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0710 ATGGAAGGGGTTTCGAGGGAAGCCCAGATGTCGATTGCCGCTTCGTCCATGTTTCCTGGGTTCAGATTCTGTCCCACCGATGAGgagttgatttctttttacCTCAGGAAGAAGTTGGACGGTCACGAAGAGAGTGTTCAAGTCATTTCCGAGGTTGAGCTTTGTAAATACGAGCCTTGGGATTTACCAGCAAAATCGTTCATTCAATCAGATAACGAATGGTTCTTCTTCTCTCCCCGTGGAAGAAAGTACCCGAATGGATCACAAAGTAAAAGAGCAACTGAATGTGGATATTGGAAGGCCACTGGTAAAGAGCGCAATGTAAAGTCAGGTTCTAACGTTATAGGAACAAAGCGGACTTTGGTGTTCCACTTAGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATTATGCATGAGTACTGCATCAATGACAAGTCTCAGGATACTTTGGTCATTTGTCGCCTTAAGAGGAACACACAGTTCCGTTTAAGCGATACATCGAATAGAGCTTCTTCAAGTCAAAGGGTTGATAATTCACATGAAAGTGGTTGTGCTATCTCAGACGGGGGAATTGATCAAAGGGGTGTCTGTGAGCAAGACAAAGAGGTTGGATGTAGCTCCAAACGGAGCAGTAGCAGTTATGGTTCTCCTTCAATGGAGCAAATTGATTGTGTGTCTGAATCGAATCCACGACCTGCAACTGAAGCTACTTTGACAGAATCTTCAGTTCCACCAAAGGAGGTGTATGAAGAGGATTGTTTTGCTGAGATACTAAACGATGATATCATCAAATTAGATGAATCATCAATCTCGGAGAATGGTCACACAAGATCACAGGATCCAGCACAGGTGCATCCTGCACAAGGCACGGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCGTTCTCCTGCAGTAGTTCGTTTCCCAAGCACAATGCACTCATCAAAGAGTGCCTTCTTAGTCCAGAATAACCAACCGTTTTGTGGTATTTGCTTTCTTCGTTTTCACTTTGATAGTTCTATATTTTTTGTCCTCATTGGGTGGACTCAAGTTAAGCATTATGGGAAATTTTCGCGTGTAAATTATGATTAG 1104 0.4303 MEGVSREAQMSIAASSMFPGFRFCPTDEELISFYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDTLVICRLKRNTQFRLSDTSNRASSSQRVDNSHESGCAISDGGIDQRGVCEQDKEVGCSSKRSSSSYGSPSMEQIDCVSESNPRPATEATLTESSVPPKEVYEEDCFAEILNDDIIKLDESSISENGHTRSQDPAQVHPAQGTAQRRIRLRVGNSKRSPAVVRFPSTMHSSKSAFLVQNNQPFCGICFLRFHFDSSIFFVLIGWTQVKHYGKFSRVNYD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0710 367 SUPERFAMILY NAC domain 9 158 IPR036093 GO:0003677|GO:0006355
Ssu8g0710 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 11 330 - -
Ssu8g0710 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 330 - -
Ssu8g0710 367 MobiDBLite consensus disorder prediction 165 188 - -
Ssu8g0710 367 MobiDBLite consensus disorder prediction 273 292 - -
Ssu8g0710 367 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Ssu8g0710 367 MobiDBLite consensus disorder prediction 165 182 - -
Ssu8g0710 367 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Ssu8g0710 367 MobiDBLite consensus disorder prediction 206 243 - -
Ssu8g0710 367 MobiDBLite consensus disorder prediction 207 242 - -
Ssu8g0710 367 Gene3D NAC domain 26 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0710 Ssu-Chr8 11554065 11557067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0710 4 284 NAC Transcription Factor Family AT2G27300 53.381 4.96e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g0710 NAM 1.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0710 - - gsj:114373381 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0710 8 11554065 11557067 Ssu8g0710 8 11554065 11557067 ECH