Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0700 ATGGGGGATCTCCCACCTGGTTTTCGCTTCTACCCAACAGAAGAAGAACTCATTGCCTTCTATCTACACAACCAGCTCGAAGGGCAAAGACACGACACGAGCAGAGTCATTCCAGTCATTGACATCAATGGCATAGAGCCATGGAGCCTTCCATCACTTGCAGGGGAGCTATGTCGTGGAGACACGGAGCAATGGTTTTTCTTTTCGCCGAGACAAGAGAGAGAAGCCAGAGGAGGCAGACCCAACAGAACCACGGCTAGTGGCTATTGGAAGGCCACTGGTTCTCCTAGCCACGTTTACTCTTCCGACAACAAAGTCATTGGTATGAAGAAAACCATGGTATTTTACAAAGGGAAAGCTCCTACCGGAAGGAAAACCAAATGGAAGATGCACGAGTATAAAGCCATTGAACACTCTGACCAATCCAACACTGCCCCTCCAAAgTTGAGGCACGAATTCAGCTTGTGTCGAGTATATGTCATATCGGGAAGCTTTCGATCGTTTGATCGACGTCCACTGGAGAGGTCAAGCGTTGAGTTACGAATTGATGGGGACAGAGGTGTTGCTTCAACAAGTGGTGCTCAACAGCCAGCACCAGCGGTGGATGGATCAAGTTCGTCCGACACTTCCCACTCTGGAGGAGAAGGTGCTGCTCATGTCCCAGAGGCTGGAGCTGGGTCAAGTGGAACAAATTGGAATGCAAGTGATAGGGTTGAGGAACCATTTTGGGAATGGGAACAACTCAATTGGCCATGA 756 0.4934 MGDLPPGFRFYPTEEELIAFYLHNQLEGQRHDTSRVIPVIDINGIEPWSLPSLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKATGSPSHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYKAIEHSDQSNTAPPKLRHEFSLCRVYVISGSFRSFDRRPLERSSVELRIDGDRGVASTSGAQQPAPAVDGSSSSDTSHSGGEGAAHVPEAGAGSSGTNWNASDRVEEPFWEWEQLNWP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0700 251 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Ssu8g0700 251 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Ssu8g0700 251 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Ssu8g0700 251 MobiDBLite consensus disorder prediction 184 236 - -
Ssu8g0700 251 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 251 - -
Ssu8g0700 251 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Ssu8g0700 251 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 251 - -
Ssu8g0700 251 MobiDBLite consensus disorder prediction 189 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0700 Ssu-Chr8 11481052 11482216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0700 7 251 NAC Transcription Factor Family AT5G22380 58.537 3.25e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g0700 NAM 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0700 - - gmx:100784960 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0700 8 11481052 11482216 Ssu8g0700 8 11481052 11482216 ECH
Ssu8g0700 8 11481052 11482216 Ssu3g2333 3 74135484 74136739 PCT