Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0688 ATGTACCACCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGGTCAGGTGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCTAGATTAAAATGGACACCGGATCTTCATGCCAGGTTTATAGAAGCAGTCAATCAGTTAGGGGGAGCTGACAGTGAGTATACACATCCGCTTGTGGATCGTCAAATCTTGAGGAACATGGAATTTGAGTTCACTAATGCAACTTACAATCTTTCTATTGCAGAGGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTGTATCATCTAAAGAGCCATCTTCAGAAGTATAGATTAAGCAAGAATCTGCACGGACAAAGCAACAATGTGACGCACAAAATCACAACAAATGCAGGCGCAGCAACTGGTGAGAGACTTTCTGAAACCAATGGAACTCACATGAACAAATTAAGCCTTGGACCGCAGGCCAACAAAGATATAAGCGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCCCAAGGGAAATACCTGCAGTCTGTGCTTGAGAAAGCTCAGGAGACTCTTGGCAGGCAAAATTTGGGAATAGTAGGACTTGAAGCTGCCAAAGTTCAACTTTCAGAGCTGGTGTCCAAAGTCTCATCTCAGTGCCTTAACTCAGCATTCTCAGAGCTGAAGGAATTGCAAGGGTTTTGCCCTCAGCAAACACAAGCCAACCAGCCAAACGATTGCTCAATGGACAGTTGCCTCACATCCTGTGACAGATCACAAAAGGAGCAAGAGATTCAAAATGGCTTAAGATACTTCAACAGCCATGTATTCATGGAACAAAAGGGGGCCCCAGAAGCTCCCAACAACCTTAGGAACTCTGAACTCAAGTGGTGTGACGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAGCAagaatgaagaaagaagaagctATGCTGTTGAAAGCAGTCCCGGCAACTTGTCCATGTCCATTGGACTTGAAAGAGAAACAGAAAATGGAAGCAGCATGTATCCTGAGAGACTAATTAGAGAAAGCCAATCAGATGGTGAGTTCCAGCACCGGAACAGAATGAAGACAGAAACAATGAAACCGGTGGGTGAAAAAGTTTCTCAAGATTATAGGCTGCCTGCTTCTTACTTTCCAGCAGCAAGATTGGACCTAAACTCCCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA 1353 0.4398 MYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADSEYTHPLVDRQILRNMEFEFTNATYNLSIAEATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTNAGAATGERLSETNGTHMNKLSLGPQANKDISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTQANQPNDCSMDSCLTSCDRSQKEQEIQNGLRYFNSHVFMEQKGAPEAPNNLRNSELKWCDDGKKNTFLAPLSKNEERRSYAVESSPGNLSMSIGLERETENGSSMYPERLIRESQSDGEFQHRNRMKTETMKPVGEKVSQDYRLPASYFPAARLDLNSHGDNEAATTCKQLDLNRFSWS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0688 450 SUPERFAMILY Homeodomain-like 45 131 IPR009057 -
Ssu8g0688 450 Gene3D - 45 133 - -
Ssu8g0688 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 70 IPR044848 GO:0003700
Ssu8g0688 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 101 450 IPR044848 GO:0003700
Ssu8g0688 450 Coils Coil 179 199 - -
Ssu8g0688 450 Pfam MYB-CC type transfactor, LHEQLE motif 177 223 IPR025756 -
Ssu8g0688 450 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 131 IPR006447 GO:0003677
Ssu8g0688 450 PANTHER MYB-RELATED PROTEIN 2 4 70 - -
Ssu8g0688 450 PANTHER MYB-RELATED PROTEIN 2 101 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0688 Ssu-Chr8 11322603 11326509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0688 108 450 G2-like Transcription Factor Family AT3G04030 50.423 8.59e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu8g0688 Myb_CC_LHEQLE 6.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0688 - - gmx:100810396 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0688 8 11322603 11326509 Ssu3g2347 3 74346498 74348991 PCT