Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0684 ATGACACTCCAACAATCAGAACAAGATGTGCCATTGCAAGAACCAGAAGCCACATTTTCTCAACTGAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCTATTGCAAGAATGGAAAGAGCTTTGGGTCCCTGAACATGGACGAATTCCTAGCCAGCATTTGGAACACCGATGACAACCAAGTTAACCCACCACCACCCATCAGTGATGAAGCTGCTAAGAGTAAAAGTGTTGCAACAGAACCCACCATTTCCCAGCCAGGCTCGTTCTCTGTCCCTCCTCCAATTTGCAAGAAAACCGTGGATGAAGTTTGGTCTCAGATCCACAAAGACCAACCACAACACAAAGAAGCCAACAGCCTTGGCAGGAATGAGACTCTCAAAAGGCAGCAAACACTTGGGGAGATGACTTTGGAAGATTTCCTAGTGAAAGCTGGGGTAGTTCAAGATTCATCATCACTATTCAAGTCTTCATCACCTCAGAATCAGACTAGTAACAATGCAAGTAATGGACCATTGAATGCAAGTTATAGATTGAGGCCTGCGATAGGGACAAGATCACGTGTGTCTAGTAATGGGCTCGAAACACACCAAATGTTGCCACCGAATAACAGCAAAGTTGTAAAGGATGCCACTACAAGTGGTGCTGTGGAGAAATGTCAAAGCTTACCAGAGTCAAGTGGGAAGGGTAATAGGAAGAGGATAATTGATGGTCCTCCTGAAGTGGTAGTAGAGAGAAGGCAACGCAGAATGTTGAAGAATCGAGAATCAGCAGCACGTTCTCGTGCAAGAAGACAGGCATATACAGTAGAGCTAGAAACAGAGCTGAATCTGCTAAAAGAAGAGAACGAAAAGCTCAAACAAATTCTGGCTGAAGCTGAACGCAAGAGAAAACAAGAGATTTCTCAGAGAAAGCACACAACAATGGCTcagaagaggagagaaaaattGAGGGCAATGAGGAGGCCTTTAAGCGGTACCTGGTGA 993 0.4391 MTLQQSEQDVPLQEPEATFSQLSKQNSILSLTLDEFYCKNGKSFGSLNMDEFLASIWNTDDNQVNPPPPISDEAAKSKSVATEPTISQPGSFSVPPPICKKTVDEVWSQIHKDQPQHKEANSLGRNETLKRQQTLGEMTLEDFLVKAGVVQDSSSLFKSSSPQNQTSNNASNGPLNASYRLRPAIGTRSRVSSNGLETHQMLPPNNSKVVKDATTSGAVEKCQSLPESSGKGNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELETELNLLKEENEKLKQILAEAERKRKQEISQRKHTTMAQKRREKLRAMRRPLSGTW 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0684 330 MobiDBLite consensus disorder prediction 155 178 - -
Ssu8g0684 330 SMART brlzneu 244 308 IPR004827 GO:0003700|GO:0006355
Ssu8g0684 330 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 330 IPR043452 GO:0003700|GO:0045893
Ssu8g0684 330 MobiDBLite consensus disorder prediction 155 176 - -
Ssu8g0684 330 MobiDBLite consensus disorder prediction 296 310 - -
Ssu8g0684 330 Pfam bZIP transcription factor 248 300 IPR004827 GO:0003700|GO:0006355
Ssu8g0684 330 SUPERFAMILY Leucine zipper domain 248 297 IPR046347 GO:0003700|GO:0006355
Ssu8g0684 330 MobiDBLite consensus disorder prediction 296 330 - -
Ssu8g0684 330 Gene3D - 246 302 - -
Ssu8g0684 330 PANTHER BZIP TRANSCRIPTION FACTOR 2 330 - -
Ssu8g0684 330 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 251 266 IPR004827 GO:0003700|GO:0006355
Ssu8g0684 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 246 298 IPR004827 GO:0003700|GO:0006355
Ssu8g0684 330 MobiDBLite consensus disorder prediction 1 21 - -
Ssu8g0684 330 Coils Coil 271 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0684 Ssu-Chr8 11281155 11282643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0684 22 330 bZIP Transcription Factor Family AT3G44460 45.283 8.82e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu8g0684 bZIP_1 9.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0684 K14432 - gmx:100799576 489.96