Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0679 ATGAGTTTTAGGGAGTGCAATGTAGAAAACAAGAATCTGTGCCTCCAAACCCCAACTTTCATTGAGTGGCTCAAACCATCCTCCTCCCTAACTAATTCAACATCATCTCCTTCTTCCTTGACTCAGCACGAACTTGCCAAAGAAACGATCCAGTTTTTTCCCTTCAAGGAAGATCATGGAGTGCAAAAGGATGATTTTGAAGTAAAAGAAGAGAAGGTGGAACAGGTGACCGTGGCTTTGCACATTGGATTGCCTAACACAGGAAGCCCTGATGGTCATGATGCTAATGAGAAGAAGGTTTTCCAAgttaaggaagaagaagaacccTTGAAGAAAAGCTTCCAGGGTTGTTCTTATAACCAGGAGCGAAGATTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGATCCGAATTTAGGAAAGGACCAGATTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACGCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTATGTGCCGAAAGTGTTCAAAAACCTTTGCTGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGAAAGTTGTGGTATTGCACTTGTGGTTCAGACTTTAAGCACAAAAGGTCCCTTAAAGATCATATTAGATCCTTTGGAAAAGGTCACTCCCCACATCCTTCTCTTGAAGGCTTCGTCGAGGATGACAAGGAATGCGTTACCGGGtctgatgaagatgaagttGCTCATACATGA 912 0.4189 MSFRECNVENKNLCLQTPTFIEWLKPSSSLTNSTSSPSSLTQHELAKETIQFFPFKEDHGVQKDDFEVKEEKVEQVTVALHIGLPNTGSPDGHDANEKKVFQVKEEEEPLKKSFQGCSYNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDDKECVTGSDEDEVAHT 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0679 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Ssu8g0679 303 SUPERFAMILY beta-beta-alpha zinc fingers 210 244 IPR036236 -
Ssu8g0679 303 SUPERFAMILY beta-beta-alpha zinc fingers 131 163 IPR036236 -
Ssu8g0679 303 PANTHER ZINC FINGER PROTEIN WIP2 42 302 IPR043584 GO:0003700|GO:0010468
Ssu8g0679 303 PANTHER ZINC FINGER PROTEIN WIP2 1 43 IPR043584 GO:0003700|GO:0010468
Ssu8g0679 303 SMART c2h2final6 224 244 IPR013087 -
Ssu8g0679 303 SMART c2h2final6 187 219 IPR013087 -
Ssu8g0679 303 SMART c2h2final6 140 162 IPR013087 -
Ssu8g0679 303 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 42 302 - -
Ssu8g0679 303 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 43 - -
Ssu8g0679 303 Gene3D Classic Zinc Finger 182 273 - -
Ssu8g0679 303 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Ssu8g0679 303 Gene3D Classic Zinc Finger 139 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0679 Ssu-Chr8 11203234 11206446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0679 9 293 C2H2 Transcription Factor Family AT1G08290 57.817 4.88e-122 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0679 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0679 - - gmx:100819306 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0679 8 11203234 11206446 Ssu8g0679 8 11203234 11206446 ECH
Ssu8g0679 8 11203234 11206446 Ssu3g2354 3 74507567 74510646 PCT