Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0678 ATGGCGGAAGAACACAGATGCCAGGCACCGCGCTTCTGCGCCAACAATTGCGGTTTCTTTGGCAGCCCCGCGACGCAGAATTTGTGCTCCAAGTGTTACCGCGATTTGCAGCTCCAGGAACAACAATCTTCCTCCGCGAAGATGGTTCTGAATCAATCGCTCGTTCCTCCTCCGTCTGCGGCGGTGGTTTCTCAGCCGTCTTCTTCTTCGGCGCCGGCGGATCCGTCTTCCGCGGTGGTTGATAACGCGCCACGCGCGGCGGAGGAGGCGAAGGCGCCGCAGCAGAACCGGTGCACGACGTGCAGGCGGCGCGTGGGACTCACGGGGTTCAAGTGCCGGTGCGGGATGGTGCTGTGCGGGACGCACCGCTATCCGGAGCAGCACGCGTGCGAGTTCGACTTCAAGGGGATGGGGAGGGAGCAGATCGCGAAGGCCAATCCGGTGGTGAAGGGCGAGAAGCTCGAGAAGATCTGA 474 0.6245 MAEEHRCQAPRFCANNCGFFGSPATQNLCSKCYRDLQLQEQQSSSAKMVLNQSLVPPPSAAVVSQPSSSSAPADPSSAVVDNAPRAAEEAKAPQQNRCTTCRRRVGLTGFKCRCGMVLCGTHRYPEQHACEFDFKGMGREQIAKANPVVKGEKLEKI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0678 157 Pfam AN1-like Zinc finger 98 134 IPR000058 GO:0008270
Ssu8g0678 157 Gene3D - 73 153 IPR035896 -
Ssu8g0678 157 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 157 - -
Ssu8g0678 157 SMART AN1_Zf_4 98 135 IPR000058 GO:0008270
Ssu8g0678 157 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Ssu8g0678 157 MobiDBLite consensus disorder prediction 56 94 - -
Ssu8g0678 157 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 157 - -
Ssu8g0678 157 SUPERFAMILY AN1-like Zinc finger 84 152 IPR035896 -
Ssu8g0678 157 Pfam A20-like zinc finger 13 34 IPR002653 GO:0003677|GO:0008270
Ssu8g0678 157 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 59 - -
Ssu8g0678 157 Gene3D - 1 72 - -
Ssu8g0678 157 ProSiteProfiles Zinc finger AN1-type profile. 92 138 IPR000058 GO:0008270
Ssu8g0678 157 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Ssu8g0678 157 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0678 Ssu-Chr8 11175297 11175770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0678 1 157 C2H2 Transcription Factor Family AT3G52800 48.555 6.17e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0678 - - gmx:106795660 263.077