Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0677 ATGTATAGCAATTTCAAGGAGCAAGCGATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCCGGGAACTACGCGAAAGCGTTCCCTCTGTACATGAACGCGTTGGAGTACTTCAAGACCCATCTCAAGTACGAGAAGAACCCTAAGATCAAAGAAGCCATCACCCAGAAGTTCACCGAGTACCTGCGCCGGGCCGAGGAGATTCGGTCCGTGCTCGACGATGGAGGGCCCGGCCCAGCCTCCAACGGGGACGCCGCCGTGGCCGCGCGGCCCAAGACCAAGCCCAAGGACGGCGAGGGCGGAGACGGTGAGGACCCGGAGCAGGCCAAGCTCCGGGCCGGGCTGAACTCGGCCATCATAAGAGAGAAACCCAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCCAAGCAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTGAAATTCCCTCAGTTCTTCACTGGTAAAAGACGACCCTGGAGAGCTTTTTTGTTGTATGGACCTCCTGGAACAGGAAAATCATATTTAGCCAAGGCAGTTGCAACAGAAGCTGAATCCACTTTTTTTAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGCGAAAGCGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCTCGAGAAAGTGCCCCTTCTATCatatttattgatgaaataGATTCCCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACAGAGCTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACGCCCTATGCCTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATATATATTCCACTACCAGATTTGAAGGCTCGCCAGCACATGTTCAAGGTGCATCTAGGAGATACTCCCCATAATTTGactgaaagtgattttgaataCTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCTGATATATCTGTCTGTGTAAAGGATGTCTTATTTGAACCTGTTCGCAAAACTCAAGATGCAATGTTCTTCTTTAAGAATCCTGAGGGTATGTGGATCCCGTGTGGACCAAAGCAACAGGGTGCATTACAAACCACAATGCAGGAGCTTGCTGCAAAAGGACTTGGTTCTAAGATCCTTCCGCCCCCTATTACAAGAACAGACTTTGAGAAGGTACTGGCTAGACAAAGGCCTACGGTAAGCAAAGCCGACCTTGATGTTCACGAGAGATTCACGAAGGAATTTGGAGAGGAAGGTTAA 1302 0.4862 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRSVLDDGGPGPASNGDAAVAARPKTKPKDGEGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGALQTTMQELAAKGLGSKILPPPITRTDFEKVLARQRPTVSKADLDVHERFTKEFGEEG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0677 433 SMART AAA_5 162 298 IPR003593 -
Ssu8g0677 433 Gene3D - 6 75 - -
Ssu8g0677 433 SUPERFAMILY MIT domain 2 81 IPR036181 -
Ssu8g0677 433 MobiDBLite consensus disorder prediction 91 109 - -
Ssu8g0677 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Ssu8g0677 433 CDD AAA 133 296 - -
Ssu8g0677 433 MobiDBLite consensus disorder prediction 71 109 - -
Ssu8g0677 433 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 433 - -
Ssu8g0677 433 Gene3D - 125 421 IPR027417 -
Ssu8g0677 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Ssu8g0677 433 Gene3D - 298 413 - -
Ssu8g0677 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Ssu8g0677 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Ssu8g0677 433 CDD MIT_VPS4 4 77 IPR045253 -
Ssu8g0677 433 PANTHER AAA DOMAIN-CONTAINING 1 433 - -
Ssu8g0677 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 429 IPR027417 -
Ssu8g0677 433 SMART smart 2 79 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0677 Ssu-Chr8 11149795 11156895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0677 161 354 Calmodulin-binding Proteins AT3G56690 37.245 2.77e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0677 K12196 - gmx:100788150 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0677 8 11149795 11156895 Ssu8g0677 8 11149795 11156895 ECH
Ssu8g0677 8 11149795 11156895 Ssu3g2360 3 74562611 74566455 ECH
Ssu8g0677 8 11149795 11156895 Ssu3g2360 3 74562611 74566455 PCT