Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0668 ATGAAGGTCGTCGCTGCTTATTTGCTCGCAGTGTTGGGAGGGAATCCAACCCCTTCTGCCAAAGATATCAAATTCATCCTCAACTCAGTTGGAGCTGAGGCTGAGGAGGAGTTGATTGAGTTGCTCTTGACTGAAGTCAAGGGCAAAGACTTCAATGAACTACTTGCTAGTGGAAGGGAGAAGATGTCTGCAGTGTCTGGTGGTGGTGCTGCAGTTGCTGTTGCTGCTGCACCTGCGGGAGGTGCTGCAGCTGGTGGTGCTGCACCTGCTGCTGAAGcaaaggaggagaagaaagaagaagaaaaggaggagTCTGATGATGATATGGGTTTTGGTTTGTTCGACTAA 348 0.454 MKVVAAYLLAVLGGNPTPSAKDIKFILNSVGAEAEEELIELLLTEVKGKDFNELLASGREKMSAVSGGGAAVAVAAAPAGGAAAGGAAPAAEAKEEKKEEEKEESDDDMGFGLFD 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0668 115 MobiDBLite consensus disorder prediction 101 115 - -
Ssu8g0668 115 Pfam 60s Acidic ribosomal protein 18 114 - -
Ssu8g0668 115 MobiDBLite consensus disorder prediction 82 115 - -
Ssu8g0668 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Ssu8g0668 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 115 - -
Ssu8g0668 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Ssu8g0668 115 Gene3D - 1 59 IPR038716 -
Ssu8g0668 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0668 Ssu-Chr8 11008752 11009792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0668 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G28500 57.759 2.24e-28 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0668 K02943 - gmx:100791682 117.087