Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0667 ATGTCAGCTATGCAGGTTAGTGTTGACGGTCTGCTTTGCTGTACAATATCAAATGACCGTTCAGTGAAAATATATGATGTAGTCAACTTTGACATGATGGTCATGATTCGCTTGCCATATGTCCCTGGTACTGTTGAATGGGTTTACAAACAAGGGGATGTCAAAGCTAGGCTTGCCGTTAGTGATAGGAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGATCCTATCATCTCCAAAGAGATACATATGGGTCCTATTACAGTTATGAAGTACAATCCTGCATGTGATTCTGTACTTTCAGCAGATGCAAAGGGGATAATTGAATACTGGAGCCCTGCTACACTTCAATTTCCTGAGAATGAGGTCAATTTTAAACTGAAAAGTGACACTAACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCAGCTATTGAGGTTAGTCCAGATGGTAAACAATTTTCCATTACATCACCTGACCGTAGGATACGTGTGTTTTGGTTCAGAACTGGTAAACTAAGGCGAGTTTATGATGAATCCCTGGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATACCGGTTGGAAGCCATTGATTTTGGTCGAAGAATGGCTGTCGAGAAGGAAATAGAGAAGACAGAAAGTGCACCACTTCCAAATGCAGTTTTTGACGAAAGTtccaattttcttatatatgcaACCTTGCTTGGGATTAAAATTGTTAATCTGCACACCAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGATCGAAATAgcaaaaaagtaagaaagatCCCTTCGGCAGCTGCAAATGCTAATGAGAGCAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTCAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAGCCAGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAACCACCAGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGGCAGTTACAACGTCACTTCCTGAGAATGTGATTTTACACACCACTATGGGTGATATTCACATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAATTTCACAACTCACTGCCGAAATGGCTATTACgataatcttatttttcataggGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGATGGCACTGGTGGGCAGTCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGtttgagGCATGATAGGCCTTTCACAGTATCAATGGCTAATGCGGGCCCAAATACAAATGGTTCTCAGTTCTTTATCACCACAGTGGCTACTCCATGGTTGGACAACAAGCACACTGTATTTGGTAGAGTTGCGAAGGGAATGGATGTTGTACAGGCTATAGAAAAAGTGAAGACAGACAAGACAGATAAGCCATATCAAGATGTTAAAATTCTAAATGTCACTGTACCAAAGTCTTGA 1551 0.3901 MSAMQVSVDGLLCCTISNDRSVKIYDVVNFDMMVMIRLPYVPGTVEWVYKQGDVKARLAVSDRNSSFVHIYDARAGSNDPIISKEIHMGPITVMKYNPACDSVLSADAKGIIEYWSPATLQFPENEVNFKLKSDTNLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESSNFLIYATLLGIKIVNLHTNKVARILGKVENNDRFLRIALYQGDRNSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKAVTTSLPENVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0667 516 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 397 414 IPR020892 GO:0003755|GO:0006457
Ssu8g0667 516 Gene3D - 351 516 IPR029000 -
Ssu8g0667 516 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 445 460 IPR002130 GO:0000413|GO:0003755
Ssu8g0667 516 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 402 414 IPR002130 GO:0000413|GO:0003755
Ssu8g0667 516 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 460 472 IPR002130 GO:0000413|GO:0003755
Ssu8g0667 516 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 473 488 IPR002130 GO:0000413|GO:0003755
Ssu8g0667 516 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 376 391 IPR002130 GO:0000413|GO:0003755
Ssu8g0667 516 SUPERFAMILY WD40 repeat-like 3 260 IPR036322 GO:0005515
Ssu8g0667 516 CDD cyclophilin_WD40 364 511 - -
Ssu8g0667 516 Gene3D - 1 339 IPR015943 GO:0005515
Ssu8g0667 516 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 19 514 - -
Ssu8g0667 516 SUPERFAMILY Cyclophilin-like 361 513 IPR029000 -
Ssu8g0667 516 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 19 514 IPR044666 -
Ssu8g0667 516 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 359 513 IPR002130 GO:0000413|GO:0003755
Ssu8g0667 516 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 363 513 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0667 Ssu-Chr8 10999614 11003992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0667 363 513 U-box Gene Family AT5G67530 47.020 3.97e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0667 K12736 - gmx:100792207 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0667 8 10999614 11003992 Ssu8g0667 8 10999614 11003992 ECH