Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0666 ATGGACCCATGGCTCGACGATCTCACCGACGACCTCCAGAGCCTGAGCTTCGCCTCCACCGCCACCGCCGACATCAAGCGGAGCACCAGCTTCGGCTCGGAAACCACCACGCTGACCGCCTCCACCTCCGCCCACCTCCCAGCCAACAAGCCCCACGCGCCGTCGTCCGACCCGCGGTGGGCCGCCATCCACCGGATCCGATCGGAGTCCCCCAGCCGCCGCATCCTCCCCTCCGACCTCCGCTTCTCCCGCCGCCTCGGCTCCGGCGACATAAGCTCCGTCTACCTCGCCGAACTCAACGACGGCTCCCTCTCCGTGATGTTCGCCGCCAAGGTCATGGACAAGAAGGAGCTCGCGAGCCGCAGCAAGGAAGGAAGAGCCAAAACCGAGAGGGAAATCCTCGAATTGCTCGACCACCCCTTCTTGCCCACCCTCTACGCCACCATCGACTCCCCCAAATGGCTCTGCCTCCTCACCGAGTTCTGTCCTGGCGGCGACCTCCACGTCCTCCGCCAACGCCAGCCCCACAAACGCTTTCCCGAACCCGCCGTCAGGTTCTACGCGTCAGAGGTGTTGGTGGCACTTGAATACCTTCACATGTTGGGGATAGTGTACCGTGATCTGAAGCCCGAGAACGTGTTAGTTCGATCGGACGGCCACATCATGCTCACTGATTTTGACCTCTCGTTAAAATGTGATGACTCTACATCAACGCCCCAGATCATCTTGGATCAAAAAAACACTCCTCGCATGGCCCCACACAAGGATCCCCACGTGGAGCCCTCTCAATTCACCTCGTCTTCCTGCATAATACCCAACTGTATAGTCCCCGCAGTGTCGTGTTTCCACCCAAAACGCAAGCGAAAGAAGAAGCAAAGGCAACATAGCGGGCCTGAGTTTGTAGCCGAGCCCATTGATGTCCGGTCCATGTCATTCGTTGGGACCCACGAGTACTTGGCCCCGGAAATCGTGTCCGGGGAGGGCCACGGTAGTGCCGTGGACTGGTGGACTTTAGgggtatttatatttgaattgttttatggTGTGACACCCTTTAGGGGCATGGACAATGAGCTAACCCTAGCAAACATTGTGGCTCGAGCATTGGAGTTCCCAAAGGAACCCACCGTGCCAGCCACGGCAAAGGACCTTATCTCTCAGTTATTGGCTAAGGACCCGGCAAGGAGGCTGGGGTCAACAATGGGTGCTTCCGCGATCAAGCACCACCCGTTTTTTCGAGGTGTTAATTGGGCATTGCTAAGGTGTACACCGCCACCCTTTGTGCCCCCACCTTATATTAAAGAAGCTGTATCTGATGAAATTGAAAGTTGTCCACAGACTCCCATTATTGATTACTATTGA 1362 0.5631 MDPWLDDLTDDLQSLSFASTATADIKRSTSFGSETTTLTASTSAHLPANKPHAPSSDPRWAAIHRIRSESPSRRILPSDLRFSRRLGSGDISSVYLAELNDGSLSVMFAAKVMDKKELASRSKEGRAKTEREILELLDHPFLPTLYATIDSPKWLCLLTEFCPGGDLHVLRQRQPHKRFPEPAVRFYASEVLVALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDSTSTPQIILDQKNTPRMAPHKDPHVEPSQFTSSSCIIPNCIVPAVSCFHPKRKRKKKQRQHSGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFIFELFYGVTPFRGMDNELTLANIVARALEFPKEPTVPATAKDLISQLLAKDPARRLGSTMGASAIKHHPFFRGVNWALLRCTPPPFVPPPYIKEAVSDEIESCPQTPIIDYY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0666 453 MobiDBLite consensus disorder prediction 39 58 - -
Ssu8g0666 453 PANTHER OS11G0150700 PROTEIN 1 452 - -
Ssu8g0666 453 SMART serkin_6 80 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0666 453 PANTHER FLIPPASE KINASE 1-RELATED 1 452 - -
Ssu8g0666 453 Pfam Protein kinase domain 309 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0666 453 Pfam Protein kinase domain 83 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0666 453 Gene3D Transferase(Phosphotransferase) domain 1 166 237 - -
Ssu8g0666 453 Gene3D Transferase(Phosphotransferase) domain 1 308 430 - -
Ssu8g0666 453 ProSiteProfiles Protein kinase domain profile. 80 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0666 453 Gene3D Phosphorylase Kinase; domain 1 79 165 - -
Ssu8g0666 453 CDD STKc_phototropin_like 78 423 - -
Ssu8g0666 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Ssu8g0666 453 SUPERFAMILY Protein kinase-like (PK-like) 59 439 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0666 Ssu-Chr8 10982529 10986462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0666 1 453 AGC Kinase Gene Family AT3G44610 68.308 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu8g0666 Pkinase 5.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0666 K08286 - gmx:100792738 818.15