Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0662 ATGAATGTTGAGATCGAATCCCCGTTTTCACTTCAATCTTCCTCTCCCATTTCCCCTTCGGCATGCCAATCATCACCACGCACACCACCTAATAACCGTAATCTAATTTTAGAATCACCTTTGCAGGCACAATTTGTACCACTCAAAAGGAAAGGGGGAAGAAAGAAGTTCCAGGAGACTAGGCACCCAATTTACAGGGGTGTCCGACAAAGAAAGGGAAAATGGGTTTGTGAACTGAGGGAACCAAAGAAAACTTCAAGGATATGGTTAGGGACATACCCTACGCCTGAAATGGCAGCTAGGGCACATGATGTGGGTGCCCTAGCCATTAGGGGCACCGCAGCAGTGCTAAACTTTCCAAACTCAGCTTCCTTACTTCCAATAGTTACCTCATCTTCAAGTAAAGATATACGAGCAGCTGCAGCACAAGCCGCGGAGAGTTTCAGACCAATCACTTCTTCTTATTCCTTGTCCACTTCTCGCAAAAAAATTAACCGCAAAAGTAAGTGCAAGAGGGTTAAAAAGGTTACATCCGTAGAGGAAAAAACGCAGGACAAGGTGCTGGACTCATCATTGAAGAGCATGCATAATTTGGATCGTGAAAGATGTGATGTTATCAACAGTGGCACAGAGAAAAACAATTCCGATTTCTCTTCATCGGTGTTCTTCGATGAGGAGGCATTCTTCAACATGCCGGGTCTCTTGGATAGAATGGCAGAGAGTTTGTGTCTTTTCCCTCTACCATCAGCGGATTATTGGGATGATTATGCTTATTGCACGGACTTCAATTTATGGACGGATTAA 804 0.4428 MNVEIESPFSLQSSSPISPSACQSSPRTPPNNRNLILESPLQAQFVPLKRKGGRKKFQETRHPIYRGVRQRKGKWVCELREPKKTSRIWLGTYPTPEMAARAHDVGALAIRGTAAVLNFPNSASLLPIVTSSSSKDIRAAAAQAAESFRPITSSYSLSTSRKKINRKSKCKRVKKVTSVEEKTQDKVLDSSLKSMHNLDRERCDVINSGTEKNNSDFSSSVFFDEEAFFNMPGLLDRMAESLCLFPLPSADYWDDYAYCTDFNLWTD 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0662 267 ProSiteProfiles AP2/ERF domain profile. 64 120 IPR001471 GO:0003700|GO:0006355
Ssu8g0662 267 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Ssu8g0662 267 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700|GO:0006355
Ssu8g0662 267 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 266 IPR045277 GO:0003700
Ssu8g0662 267 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 4 266 - -
Ssu8g0662 267 SMART rav1_2 64 126 IPR001471 GO:0003700|GO:0006355
Ssu8g0662 267 MobiDBLite consensus disorder prediction 1 33 - -
Ssu8g0662 267 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Ssu8g0662 267 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Ssu8g0662 267 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Ssu8g0662 267 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0662 Ssu-Chr8 10929512 10930315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0662 39 266 AP2-EREBP Transcription Factor Family AT4G25470 43.290 6.04e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu8g0662 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0662 - - var:108332912 359.762