Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0654 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTAGACCCAGCTGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAAGCAAGTGAACCTGTGGTTCTCTATTTGAAAGTTGATGAGCAGAAATTTGTCTTGGGAACCCTTTCCAGGGAGAAAATACCTCAAATATCACTGGAATTGGTCCTTGAAAAGGAGTTTGAGCTTTCCCACAATTCAAAAAATGCCAGTGTCTATTTCTGTGGATACAAGGCTTATTTCGCGGGCGATGATAGTGAGGAGGATGAATTTACTGACAGTGATGAAGATCTGCCATTGACAAACACAGAGAATGGAAAACCTGAAACAAAAGCTGAAGACTTAAAGGTACCTGAATCTAAAAAACCTGATGCCAAGGTTAGTGCATCAGCAAAACAAGTCAAGGTTGTTGAACCAAAGAAAGATAACGAGGAGGATTCTGATGATGATTCTGACGAAGATGATGATTTTGGAAGTTCTGACGAAGATATGGAGGATGCTGATAGTGACAGTGATGAGGAAAGTGATAGTGATGACGATGACAACGAAGAGACCCCTCCAAAGAAGGCCGATTTGGGAAAGAAGAGACCCAATGAGTCTGCATCAAAAACTCCAGTTTCCTCCAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGaTGGCAAGAAAACTGGACATACAGCAACTCCTCACCCCATGAAGAAAGGTGGAAAGACTCCCAACAGTGAAGGCAAGGACAAGACTCCCAAGTCTGGAGGACTCTCTTGCAAAAGTTGTAGCAAGTCTTTCAACTCTGAAAGTGGTCTGCAACAACATAATAAGGCAAAGCATGGTGGTCAGTGA 894 0.4306 MEFWGAEVKVGESVKVDPAEFEACIHLSQAALGEAKKDKASEPVVLYLKVDEQKFVLGTLSREKIPQISLELVLEKEFELSHNSKNASVYFCGYKAYFAGDDSEEDEFTDSDEDLPLTNTENGKPETKAEDLKVPESKKPDAKVSASAKQVKVVEPKKDNEEDSDDDSDEDDDFGSSDEDMEDADSDSDEESDSDDDDNEETPPKKADLGKKRPNESASKTPVSSKKAKNATPEKTDGKKTGHTATPHPMKKGGKTPNSEGKDKTPKSGGLSCKSCSKSFNSESGLQQHNKAKHGGQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0654 297 MobiDBLite consensus disorder prediction 160 198 - -
Ssu8g0654 297 MobiDBLite consensus disorder prediction 104 297 - -
Ssu8g0654 297 MobiDBLite consensus disorder prediction 230 244 - -
Ssu8g0654 297 MobiDBLite consensus disorder prediction 124 145 - -
Ssu8g0654 297 MobiDBLite consensus disorder prediction 270 291 - -
Ssu8g0654 297 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 293 - -
Ssu8g0654 297 Gene3D Nucleoplasmin core domain 1 99 - -
Ssu8g0654 297 SUPERFAMILY beta-beta-alpha zinc fingers 246 293 IPR036236 -
Ssu8g0654 297 MobiDBLite consensus disorder prediction 199 215 - -
Ssu8g0654 297 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Ssu8g0654 297 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 293 - -
Ssu8g0654 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 297 IPR013087 -
Ssu8g0654 297 ProSitePatterns Zinc finger C2H2 type domain signature. 273 294 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0654 Ssu-Chr8 10757059 10760039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0654 1 294 C2H2 Transcription Factor Family AT5G03740 40.190 3.55e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0654 NPL 7e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0654 - - gmx:100795506 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0654 8 10757059 10760039 Ssu8g0654 8 10757059 10760039 ECH
Ssu8g0654 8 10757059 10760039 Ssu3g2397 3 75222915 75225578 PCT