Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0649 ATGGGGAGCAAGGTGAGCGACCACCACTTGTCCACCGTCCGATCCATCGTGGGTTCCGAATTCACAGACATGGACATCATCAGAGCCCTACACATGGCCAAGAACGACGTCACTGCGGCCATCAACATCATCTTCGACACCCTCACCCCCCAAAAATTCAAGCCCACTCGCCCCAGCAATCCCCGGCCAGTTTCTCCCCCAAGACCGGCTCCACCCGCTCCCACTGTCACCGCCAACTCCAACCGTGGCGTCGGCGAAGGACACAGCGATAGTAACCGCGATGATTGGTGGTTCGTGAGTTGCGGCGAAATGACCGGTTTGTCCACGTGTAAAGGGAGGACTATAAGCTCCGGCGAGGCTGTGGTTTTCAAGTTTCCGACGAAGACGCCCTCCGCTTCGCCCAAGGGGTTCGGACGTGCAGCGACGTGTTCGGAGATAGTTCGATTCTCCACCGAACAAGCTGGGGAGATTGGTAGAATACCGAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAACTCGCGCCTAAAGTTTTAGGCATCATGGACTCCATTGTTTTGTCGGTGAGTGTATTTATCAATAGTTCGATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACACCACGGATGAGTCGGTGTTTCATCCGCTTCCAACTTTGTTTCGGTTGCTTGGCCTAAATCCTTTTAAGAAGGCAGAGTTAACTCCTGGTGATTTCTATTCCAACAAGCGTCCTCTCAGTCAAAGGGTTGGATTACTACGTGCCAAGGTTGAGCATCCTTCTCAAAATGGTCTTGAGAATGACAATGAGGATTCCATATCTGAAATTGATGTTGAGAACATTGTTGGTGTTGGATCAAGCTCGGAGTTAGAGGAAACGGACCCCCCTAGTAATCTTCTGTGTGAACTGCGGCCCTATCAAAAGCAGGCACTTTATTGGATGCTCCAGATGGAGAAGGGACAGTCTATGGATGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATATCACCTGGCTGACAAGAGGGAGcttgttatttatttgaatgCATTTTCTGGTGAAGCCACAGTAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCCTTGCCCATTCAGGAAAGGGTGGATCAATAGGCAGTCAACCCATAACCCAGTCCTTTATTGAAGGCGGTGATGTTAGTGATACAGTGCATAATTTTTCAAGCAAACCCAAAAAGGCAACCAAATTTGCTGGTTTTGATAAACTGATGAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGCACACCCTGGGTCTCTGTCTCTGTATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTTGCTCAAAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCTAGTGAGAATGCAGAGGATAATGGTGGACTCTTCTCAATTCAGTGGTTTAGAGTGGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGTCAAATTTCTATAGCAGCTGCTGCTCTAATTGCTGACAGACGATGGTGTCTGACAGGCACTCCTATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCCTGGGGTCATTGGGCCTGGTGGAACAAACTCATTCAGAAACCATTTGAGAGTGGTGATGAAAGAGGGCTGAAATTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCCATCCTAGTTCTCCCTCCAGCTGATATGCAGGTTATTTACTGTGAACCCACAGAAGCTGAAAAAGACTTTTATGAAGCCCTATTCAAAAGATCTAAGGTAAAGTTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTGCTTTTACGTCTTCGGCAATGTTGTGATCatccatttcttgtaatgagTCGAGGTGATACTCAAGAATTTGCTGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACCTATAATGCTTCAGAAGGTGAAGTAACAGATGTACCTTCGCGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGCAAAGGGGAGCAAGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCCTGGCAAGTTGGCGAAGTGCTACTTCTGGTTTATGTCCTGTCTGTAGGAAAACGATCAGCAGGCAGGATCTTATCACTGTCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCGTGTAAGGTAACTGTTCTTTTGGATGAACTTGAAAATCTTCGCTCATCAGGCTCCAAAAGCATTGTTTTTAGCCAGTGGACCGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGgaataaaatttcatttgttcGTCTTGATGGGACTTTGAATCAGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCAGAAGACAGCAACACCCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTGGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATTAAACGGTTTATTTTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACAGATCAAGAAGTTCGAACTGCTCGGATTGAGGAGTTAAAGATGCTTTTTACTTAG 3003 0.4549 MGSKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTLTPQKFKPTRPSNPRPVSPPRPAPPAPTVTANSNRGVGEGHSDSNRDDWWFVSCGEMTGLSTCKGRTISSGEAVVFKFPTKTPSASPKGFGRAATCSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDHKVRIEGQCKLAPKVLGIMDSIVLSVSVFINSSMFGKHHQVSLKDAANTTDESVFHPLPTLFRLLGLNPFKKAELTPGDFYSNKRPLSQRVGLLRAKVEHPSQNGLENDNEDSISEIDVENIVGVGSSSELEETDPPSNLLCELRPYQKQALYWMLQMEKGQSMDETATTLHPCWEAYHLADKRELVIYLNAFSGEATVEFPSTLQMARGGILADAMGLGKTIMTISLLLAHSGKGGSIGSQPITQSFIEGGDVSDTVHNFSSKPKKATKFAGFDKLMKQKNALTSGGNLIICPMTLLGQWKAEIETHAHPGSLSLYVHYGQSRPKDAKSLAQSDVVITTYGILASEFSSENAEDNGGLFSIQWFRVVLDEAHTIKSSKSQISIAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFESGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYNASEGEVTDVPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRSATSGLCPVCRKTISRQDLITVPTENRFQVDIEKNWVESCKVTVLLDELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNKISFVRLDGTLNQQQREKVIKQFSEDSNTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFILKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0649 1000 PANTHER DNA REPAIR PROTEIN RAD5 103 1000 - -
Ssu8g0649 1000 SMART ultradead3 314 610 IPR014001 -
Ssu8g0649 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 989 IPR027417 -
Ssu8g0649 1000 CDD RING-HC 765 804 - -
Ssu8g0649 1000 ProSitePatterns Zinc finger RING-type signature. 780 789 IPR017907 -
Ssu8g0649 1000 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 376 593 IPR014001 -
Ssu8g0649 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 631 IPR027417 -
Ssu8g0649 1000 Pfam SNF2-related domain 321 709 IPR000330 GO:0005524|GO:0140658
Ssu8g0649 1000 SUPERFAMILY RING/U-box 752 811 - -
Ssu8g0649 1000 MobiDBLite consensus disorder prediction 56 74 - -
Ssu8g0649 1000 Pfam Helicase conserved C-terminal domain 836 947 IPR001650 -
Ssu8g0649 1000 Gene3D - 647 1000 IPR027417 -
Ssu8g0649 1000 CDD SF2_C_SNF 831 958 - -
Ssu8g0649 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 730 829 IPR013083 -
Ssu8g0649 1000 SMART helicmild6 864 947 IPR001650 -
Ssu8g0649 1000 SMART HIRAN_2 99 204 IPR014905 GO:0003676|GO:0008270|GO:0016818
Ssu8g0649 1000 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 103 1000 - -
Ssu8g0649 1000 CDD DEXDc_SHPRH-like 318 631 - -
Ssu8g0649 1000 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 835 1000 IPR001650 -
Ssu8g0649 1000 MobiDBLite consensus disorder prediction 51 90 - -
Ssu8g0649 1000 SMART ring_2 765 804 IPR001841 -
Ssu8g0649 1000 Pfam HIRAN domain 103 200 IPR014905 GO:0003676|GO:0008270|GO:0016818
Ssu8g0649 1000 ProSiteProfiles Zinc finger RING-type profile. 765 805 IPR001841 -
Ssu8g0649 1000 Pfam Zinc finger, C3HC4 type (RING finger) 762 810 - -
Ssu8g0649 1000 Gene3D - 441 632 IPR038718 -
Ssu8g0649 1000 Gene3D - 373 420 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0649 Ssu-Chr8 10633281 10641829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0649 1 1000 RAD5 or RAD16-like Gene Family AT5G22750 71.085 0.0 1500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu8g0649 SNF2_N 3.1e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0649 K15505 - gmx:100794452 1818.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0649 8 10633281 10641829 Ssu8g0649 8 10633281 10641829 ECH