Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0648 ATGGAACCTCCCGTTGCGAGATCCAGGGGTCGCCCACGGAAACGGAGAAGAGAAGAGGACGCAACCGTCGCCGTTGATTCGAAATCGCTTCCCGAAGCGAAGAAGACGCCGCCGATAGCATTGGTTGGACGATACGTGCTGAAAGAGTTCCGCAGAAACACTGTTCTTCTCGGCAAAGTCGTGCGCTACGAGCGCGGATTATACAGAGTCGTGTACGAGAGTGGCGGTTTCGAGGATTTGGATAGCAGCGAGATTCGTAGGATACTTCTCCTTGACAGTTATTTCGACGTGGATTTGATTCGGAGGAGGAGCGAATTAGAGGAATCGGTGCTGCCGAAGATCGCAGAGGAGCCGGAGAAAGGTTCGAGCGAATTGCGCGGTGATTTACCGGTTGAGAACGAAGAGGAACGAGACGAAACGGACGATGACTCGTTCACTGAGGCTAGGGATTCGAGTTCCGATGCCGAAACGCCGGTACCGTCGCCGCTGACGCTGCCGCCGTCTTCTGGAACAATTGGCGTGCCGGAACGGTGCGTTTTGGATCTCTTTTCAGTTTACGGATTCCTGCGATCGTTCAGCATTCGCCTGTTTCTGAGTCCGTTTACTTTGGACGAGTTTGTTGGCGCTCTGAACTGTAAAGTTTCGAACGCGTTGCTTGATGCTATTCACGTTTCGCTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCAGCAGACGGCTCACGGCGTGCATCAAAATGCCTCAGgTGCAGTGATTGGAGCTTGCTTGATGCTTTGACTTGGCCTGTTTTTGTGTTTCAGTATTTAGCAATTTATGGATACACAAAGGGACCTGAGTGGAAAGGATTTTATGACGAAATTTTTTATGGCGAGTATTATTTATTGCCTGAAAGTAGGAAGTTGATGATATTGCAAATTCTTTGTGATGATGTTTTGGCGTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATGGATTATGATAATGAAGATATCCTTCCTGCTGAAAATGGGCCAAGAAGAGTCCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACTAAGAAGTATGTTTCAGAATTGAATGCTGCGAATCTACCTGGTAACTCTATTTCATGTATCAGAGATACTGAAACTACTGAGGATGTCGATGGAAATGGAGATGAATGTCGCCTATGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGTTGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGTATATACCAGAAGGGGCATGGTATTGTCCAGAGtgcaaaataaatatgattggGCCTACAATTGCACGGGGCACATCACTTAAAGGGGCTGAAGTATTTGGAAAGGATTTGTATGGACAAGTTTTCATGGGTACTTGTGACCACTTACTGGTGCTCAATGTCAACTGTGATGAATTTTGTCTTAAATACTACAATCAGAATGATATTCCTGAAGTTCTCAAAGTGCTTTCTGCATCAGTGCAACACAGACCAATATACAGTGGTATTTGCATGGCAGTGTTACAATATTGGAATATTCCAGAAAGCTCCTCACCCCTTTGTGTCACAACTGGACCACAAGTAAACTCAACAAATACAAAGATGGATGCAAACTTCTCTACTGCACTACTTCGTCCAATGGTTGAAGAAGAACATAAAGCTGTTAGTTTGGTGACGGCAGAACACAGTTTAATGTTTGCGAGTGGGATTTGTAGTGATAATACAGTGACATCTCTTGATGCTTCATCGGTTACCACTCAAAGTTGTGCTCCTGGAAGCAGAGGTAATGCAAGAACTAAGGAGTCCCCTACCATGAATTTGAAGCTTCATGAGGAAACTGCAATGGATTCAGTTGTTTCAACTGTTAACCATCAGTCTGACCCAAAGTACCAAAATTCTGTTAATAGGTCAGCTGCAGTAGGTCCTACGAAGTGCTTCTTGATAAGCAGGCAATTTACTAATTATGGGCACTTAAATGACATAGGGTTGCCTGCGAATTTGTCTTTGCAAACTAAAGTTGACCAAGCTGTTTTTGGAAAGTGCAAAGGAAGTTTAACCAATGATTTTGTGTACATGGGTTGCTCCTATAAACCACAGTCATACTCTAATTACTATATGCATGGTGATTTTGCTGCATCAGCTGCTGCTAACCTGGCCGTTCTTTCTTCAGAAGATTCTAGATCAGAGGGTCATGTGTCTGACAACTTGGGGAAAGCAACATCTGGAAACACTTATTTGCTTGCAAAAGCATTCTCACTAACGGCTTCTCGCTTCTTTTGGCCAAGTTCCGATAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGCGGCTGGTGCCTTTCTTGTAAAGCCCTTGTTACTAGCAAGAAAGGATGCATGCTAAATCATGCTGCTCTAAGTGCCACCAAAAGTGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATCATCCCTAGCATTGCaacatatgttatatatatggaGGAAAGTTTACGTGGTTTAATAGTTGGGCCCTTTCTAAGTGAACGTTATAGAAAGCTATGGCGTAAACAAGTGGAACGAGCCACATCATTTAGTGATATAAAGCCTCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTGAAGTTGGTGGATGATTGGTTGGTTGAATTTTCTACAATGCAAAGCGCTGCATGTACTCTTGGAACAACACAGAAACGTGCAACATGTGGGAGGCGTAAGAAACAGTTATCTATCAATAAAGTTACAGCTGGTGGTTGCCATGAAAATTTTGCATGGTGGCATGGCGGGAAATTTACCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGTCAGAAAAGCGGCCCGCCAAGGTGGTTTGAGGAAAATTTCAGGCATATTCTATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCCGATATCTAGATTTTCATATCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCAGGATGGTAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGGAATGCAAAcatttgtgagaaaaaaattgcaGAGGGCAAAATTTTTTACAGAGCAGCCTTTGGGAGCCAAAAGCATCTTCCTTCTCGGGTaatgaaaaatgttgaaatagAGCAAGGTCCTgaaggaaaggaaaaatattggtTTTCCGAAATACGCATTCCTTTATATTTGGTAAAAGAGTATGAAGTACGCAGTGGGAAAGTACAATCTGATAAAGAGTACCTGCATATTACATATCTGTTGCACAAAAGGAAGTTGAAAGGTACCCACAAGgacatatttttttaccttGCCTGCAAGAGAGACAAGTTGGACATGTTGTCATGCTCTGTATGTCAGCTGGGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACTGGTTGTTCTGTAAGTTCAACGGTCTCTACATGTGAAGAAGTTGTGTTCTTGGCTACATGCCAACTATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCCTGTAATGAATCTCCAACTAGTCCCTTACTCTTACAAGGACAAGAACGTAGCTCTTTGACAGATCTGAAGGGGCCAAGGCCTAGATGTTATGGTCAAGGATTGATGTCTACTAGGACGAAGAATAGTCGACTTGACATGAAACAAGTTGCTTCTTATCCCCCTTTGGAAACAAAAGGCCGTAGCAGAAATTGTTCTTGGGGTATTATatggaaaaagaagaataatgaagatacAGGCTTTGATTTCAGGCTCAAGAACATACTTCTAAAAGGAGGTTCAGGCCTGCCTCAATTGGAGCCTGTTTGTCGCTTGTGCCATAAACCATATAGGTCTGATCTAATGTATATTTGCTGTGAAACATGCAAAAATTGGTATCATGCTGAAGCTGTTGAAATTGAAGAGTCCAAACTTTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCGCCTGTGTGTCCTTACTCTGATTTGTTGTACAAGACGCAAGAGGGCAAGAAGTCACACTCAAGGGCTTCAAAGAAAGAGCACATTGGGGCAGATTCTGATTCTGGTACAGCTATTGACATGAGAGCATGTGAGCCTGCAACTCCTATCTATCCTGCAGAGGATGTCTCCAGACAAGACAATGATCCTCTACTGTTCTCCCTTTCAAGTATTGAGCTGATTACAGAACCCAAGTTAGATGCAGATGTTGAGGGTAATACTGTCTCTGGGCCAGGGCTTCCTAAATTACCTTTGAGAAGGCATTTTAAACATGAGAGGGAGAATAATGGTTCTTTTAGAGGTAATCTGCATGCTGAGTTTTCAACAAGCAATGAAACGGTGTCCAAATCTGTAAAAGAGTTATCACCTTCTGTAGAATGTGGCTCTGCTGACTGCAATCTTCTGAATGACtctgaaattgtaaattatgaaTTTGTGGATTTTGAACCTCATACCTACTTCTCTCTGACTGAACTGCTCCACCCAGATGATAATAGTCAATTTGAGGGAGCTAAGGCATCTGGGGACTTCTCAGGATATTTGAAAAATTCTTGTACATTAGGTATTCCTGAAGAATGTGGGACTGTTAATTTAGCCTCCAGCTGTGGACCTACTATTTCGTTACAAGGAAATGTTAATAATTGTGAACAATGTTCACAAAAGGATCCAGCCCCTGATCTTTCTTGTCAGATTTGTGGGATTTGGATTCACAGTCAATGTTCACCTTGGGTTGAATCACCATGTAGGCTCGGAAGTTGGAGATGTGGTAATTGCCGGGATTGGCGATAG 4953 0.4201 MEPPVARSRGRPRKRRREEDATVAVDSKSLPEAKKTPPIALVGRYVLKEFRRNTVLLGKVVRYERGLYRVVYESGGFEDLDSSEIRRILLLDSYFDVDLIRRRSELEESVLPKIAEEPEKGSSELRGDLPVENEEERDETDDDSFTEARDSSSDAETPVPSPLTLPPSSGTIGVPERCVLDLFSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNALLDAIHVSLMRVLRRHLENISADGSRRASKCLRCSDWSLLDALTWPVFVFQYLAIYGYTKGPEWKGFYDEIFYGEYYLLPESRKLMILQILCDDVLASEELKAEMNMREESEVGMDYDNEDILPAENGPRRVHPRYSKTTACKDSETKKYVSELNAANLPGNSISCIRDTETTEDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYIPEGAWYCPECKINMIGPTIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVLNVNCDEFCLKYYNQNDIPEVLKVLSASVQHRPIYSGICMAVLQYWNIPESSSPLCVTTGPQVNSTNTKMDANFSTALLRPMVEEEHKAVSLVTAEHSLMFASGICSDNTVTSLDASSVTTQSCAPGSRGNARTKESPTMNLKLHEETAMDSVVSTVNHQSDPKYQNSVNRSAAVGPTKCFLISRQFTNYGHLNDIGLPANLSLQTKVDQAVFGKCKGSLTNDFVYMGCSYKPQSYSNYYMHGDFAASAAANLAVLSSEDSRSEGHVSDNLGKATSGNTYLLAKAFSLTASRFFWPSSDKKLVEVPRERCGWCLSCKALVTSKKGCMLNHAALSATKSAMKILSGLAPVRSGEGIIPSIATYVIYMEESLRGLIVGPFLSERYRKLWRKQVERATSFSDIKPLLLKLEENIRTIAFCGDWVKLVDDWLVEFSTMQSAACTLGTTQKRATCGRRKKQLSINKVTAGGCHENFAWWHGGKFTKSVFQKAVLPKSMVRKAARQGGLRKISGIFYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFHIRWSDLIRPEHNLQDGKGQDTEASAFRNANICEKKIAEGKIFYRAAFGSQKHLPSRVMKNVEIEQGPEGKEKYWFSEIRIPLYLVKEYEVRSGKVQSDKEYLHITYLLHKRKLKGTHKDIFFYLACKRDKLDMLSCSVCQLGVLIGNALKCSACQGYCHTGCSVSSTVSTCEEVVFLATCQLCHHAKLLTQKESCNESPTSPLLLQGQERSSLTDLKGPRPRCYGQGLMSTRTKNSRLDMKQVASYPPLETKGRSRNCSWGIIWKKKNNEDTGFDFRLKNILLKGGSGLPQLEPVCRLCHKPYRSDLMYICCETCKNWYHAEAVEIEESKLFDVLGFKCCKCRRIKSPVCPYSDLLYKTQEGKKSHSRASKKEHIGADSDSGTAIDMRACEPATPIYPAEDVSRQDNDPLLFSLSSIELITEPKLDADVEGNTVSGPGLPKLPLRRHFKHERENNGSFRGNLHAEFSTSNETVSKSVKELSPSVECGSADCNLLNDSEIVNYEFVDFEPHTYFSLTELLHPDDNSQFEGAKASGDFSGYLKNSCTLGIPEECGTVNLASSCGPTISLQGNVNNCEQCSQKDPAPDLSCQICGIWIHSQCSPWVESPCRLGSWRCGNCRDWR 1650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0648 1650 SMART PHD_3 1164 1213 IPR001965 -
Ssu8g0648 1650 SMART PHD_3 1324 1372 IPR001965 -
Ssu8g0648 1650 SMART PHD_3 1602 1647 IPR001965 -
Ssu8g0648 1650 SMART PHD_3 399 442 IPR001965 -
Ssu8g0648 1650 MobiDBLite consensus disorder prediction 1 30 - -
Ssu8g0648 1650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1320 1378 IPR013083 -
Ssu8g0648 1650 SMART testlast3 176 236 IPR018501 -
Ssu8g0648 1650 SUPERFAMILY FYVE/PHD zinc finger 1320 1378 IPR011011 -
Ssu8g0648 1650 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 291 323 IPR028942 -
Ssu8g0648 1650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 472 IPR013083 -
Ssu8g0648 1650 ProSiteProfiles Zinc finger PHD-type profile. 397 444 IPR019787 -
Ssu8g0648 1650 Pfam PHD-finger 400 442 IPR019787 -
Ssu8g0648 1650 PANTHER PHD FINGER FAMILY PROTEIN 1 1647 - -
Ssu8g0648 1650 Pfam DDT domain 178 233 IPR018501 -
Ssu8g0648 1650 MobiDBLite consensus disorder prediction 113 133 - -
Ssu8g0648 1650 SUPERFAMILY FYVE/PHD zinc finger 392 448 IPR011011 -
Ssu8g0648 1650 CDD PHD_SF 1324 1371 - -
Ssu8g0648 1650 MobiDBLite consensus disorder prediction 113 168 - -
Ssu8g0648 1650 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1647 - -
Ssu8g0648 1650 CDD PHD_SF 1603 1646 - -
Ssu8g0648 1650 ProSitePatterns Zinc finger PHD-type signature. 400 441 IPR019786 -
Ssu8g0648 1650 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0648 Ssu-Chr8 10616112 10623593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0648 266 529 EF-hand Containing Proteins AT5G22760 50.000 2.69e-76 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ssu8g0648 DDT 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0648 - - gmx:100808614 2764.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0648 8 10616112 10623593 Ssu8g0648 8 10616112 10623593 ECH