Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0639 ATGGCGGAGGACCGGAGTGAGGCGAGTGATTACAGTTCGGAGGACGAAGGAACCGAGGATTACAGACGCGGAGGGTACCATGCGGTTCGGATTGGTGACACTTTCAAGAATGGGTGCTATGTGGTGCAGAGCAAGCTTGGTTGGGGTCACTTTTCCACTGTTTGGCTCGCTTGGGACACTCACAAATCGCGATATGTTgccttaaaaattcaaaagagtGCTCAACATTACACTGAAGCAGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGACGGGGATCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACCCTTATCAAGTATAGTGATTATCGAGGGGTTCCCCTTCCTATGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGGGAACTTTCTGTAATACACACAGATTTGAAGCCTGAGAATGTCTTGCTTCTGTCTCCAATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACGAAGGATAAGACTGTGACCAAGAATGGGACAACAATAGCCAATAAAAGTTTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCAGCTCAAGTCTATGTTGGGAAGGAAAATGCTGAGGAAGCTGAGGAGGATTCCAAAGCACCTGACGAGCAAGATGATTGTAGTAATGATGTGAAACCAAGTGTAGAATCTGGTGAAGTTAAACCTAATAGTCCTGTGAGTAAAGATGAATCAACAAAGACTTCTGAAAATAAGGATGTTCCACAAGGAAGTTATGGTCATAGGAGAGGTAGCCGCTCTACAAGAAAGAAATTGCTTGCAGCTGTTGATCTTAACTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGATGCCCTGAGGTTCTTCTTGGATCCAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTTCTTTGAGCTTGCCACCGGCGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGGACGATGCCTCGCAAGGTAGGCATGTTCGGCATTTGGCTGTAA 1251 0.4245 MAEDRSEASDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTHKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKTVTKNGTTIANKSLNGDLTKNQKKKLRKKAKKAAQVYVGKENAEEAEEDSKAPDEQDDCSNDVKPSVESGEVKPNSPVSKDESTKTSENKDVPQGSYGHRRGSRSTRKKLLAAVDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIFFELATGDVLFDPHSGDNYDRDEDHLALMMELLGTMPRKVGMFGIWL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0639 416 SUPERFAMILY Protein kinase-like (PK-like) 35 411 IPR011009 -
Ssu8g0639 416 MobiDBLite consensus disorder prediction 202 221 - -
Ssu8g0639 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Ssu8g0639 416 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Ssu8g0639 416 CDD STKc_SRPK 29 409 - -
Ssu8g0639 416 MobiDBLite consensus disorder prediction 1 20 - -
Ssu8g0639 416 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 411 - -
Ssu8g0639 416 SMART serkin_6 40 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0639 416 MobiDBLite consensus disorder prediction 181 308 - -
Ssu8g0639 416 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Ssu8g0639 416 ProSiteProfiles Protein kinase domain profile. 40 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0639 416 PANTHER SERINE KINASE-LIKE PROTEIN 8 411 - -
Ssu8g0639 416 Pfam Protein kinase domain 319 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0639 416 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0639 416 Gene3D Transferase(Phosphotransferase) domain 1 123 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0639 Ssu-Chr8 10539846 10543048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0639 6 413 EF-hand Containing Proteins AT5G22840 71.084 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Ssu8g0639 Pkinase 2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0639 K08832 - gmx:100809984 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0639 8 10539846 10543048 Ssu8g0639 8 10539846 10543048 ECH
Ssu8g0639 8 10539846 10543048 Ssu3g2411 3 75455369 75459722 PCT