Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0634 ATGCACCCTCAAACCATGGAAAAGCTCCAGCTTTTCTGCGGTGACACTATCCTCATCAAGGGTAAGAAATGGAGGGATACAATTTGTATAGCTCTTGCCGATGAAAATTGTGAGGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCAAATTTGCAAGTTCGGCTTGGAGTTGCTGTGTCTGTGCACCAGTGCCTGGATGTCAAGTATGGGAAACGTGTGCACATTTTGCCCATTGATGATACCATTGAAGGTGTCACCGGCAACCTATTTGATGCTTTCTTGAAACCTTATTTTTTGGAGGCATATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGGGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGAGTGTATTGTGTGGTTGCTCCAGACACTGAAATTTTCTGTGAGGGGGAACCtttgaaaaaaaaggataaagttGGGTATTATGATGTGGGTGGTGTCAGGAAACAAATGGCTCAGATTCGTGACTTGGTTGGGCTTCCATTGAGATATCCAcagctttttaaatcaattggtGTGAAACCTCCCAAAGGAATTTTACTTTACGGACCCCCAGGTTCTGGGAAGACATTAATAGCGAGAGCTGTAGCTAATCTCAGGAAAGTGTTTGAAGAAGCCGAAAAGAATGCACCATCCATTATCTTTATTGATGAAATTGATTCCATTGCCCCCAAGCGGGAGAAGACACATGGTGAAGTTGAGAGGAGGATTGTTTCACAACTTTTGACTCTTACGGATGGATTAAAATCTCGTGctcatgttattgttattggagCTACTAATCGTCCAAATAGCATCGACCCAGCATTGAGAAGGTTTGGCAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTATGATGATGTTGATCTAGAGAGAATTGCAAAGGAGGTACTCATGGCTGCTTTACAATGCATTAGGGAGAAGATGGATGTCATTGACTTGGAGGATGAGACTATTGATGCTGAAGTACTGAATTCTATGGCAGTGACTAATGAGCATTTCCTGACTGCACTTGGAACAAGCAACCCATCAGCTTTACGTGAAactGTTGTTGAAGTGCCTAATGTCAGCTGGGATGACattggaggccttgacaatgtCAAGCGTGAACTGCAAGATACTGTTCAATATCCTGTTGAGCACccagaaaattttgagaagtttggtATGTCACCCTCAAAAGGAGTCCTCTTCTATGGTCCTCTGGGATGTGGGAAAACTTTATTAGCCAAAGCAATTGCTCATGAATGTAAAGCTAACTTCATCAGTGTGAAAGGTCCAGAATTGCTTACAATGTGGTTCGGTGAAAGTGAAGCCCGTGTTCGAGAAATTTTTGACAACGCTAGACAATCAGCTCCATGCGTCCTCTCTTGTTGA 1482 0.4049 MHPQTMEKLQLFCGDTILIKGKKWRDTICIALADENCEEPKIRMNKVVRSNLQVRLGVAVSVHQCLDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGVYCVVAPDTEIFCEGEPLKKKDKVGYYDVGGVRKQMAQIRDLVGLPLRYPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANLRKVFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLTDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLYDDVDLERIAKEVLMAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFLTALGTSNPSALRETVVEVPNVSWDDIGGLDNVKRELQDTVQYPVEHPENFEKFGMSPSKGVLFYGPLGCGKTLLAKAIAHECKANFISVKGPELLTMWFGESEARVREIFDNARQSAPCVLSC 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0634 493 CDD AAA 190 299 - -
Ssu8g0634 493 Pfam Cell division protein 48 (CDC48), N-terminal domain 1 65 IPR003338 -
Ssu8g0634 493 Gene3D - 301 379 - -
Ssu8g0634 493 Gene3D - 68 145 - -
Ssu8g0634 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 491 IPR027417 -
Ssu8g0634 493 SMART CDC48_2_2 85 151 IPR004201 -
Ssu8g0634 493 SMART CDC48_N_2 1 68 IPR003338 -
Ssu8g0634 493 Pfam Cell division protein 48 (CDC48), domain 2 87 148 IPR004201 -
Ssu8g0634 493 Gene3D - 146 214 IPR027417 -
Ssu8g0634 493 Pfam ATPase family associated with various cellular activities (AAA) 214 299 IPR003959 GO:0005524|GO:0016887
Ssu8g0634 493 Pfam ATPase family associated with various cellular activities (AAA) 431 491 IPR003959 GO:0005524|GO:0016887
Ssu8g0634 493 PANTHER AAA-FAMILY ATPASE 1 214 - -
Ssu8g0634 493 PANTHER AAA-FAMILY ATPASE 213 491 - -
Ssu8g0634 493 Gene3D - 215 300 IPR027417 -
Ssu8g0634 493 ProSitePatterns AAA-protein family signature. 270 288 IPR003960 GO:0005524|GO:0016887
Ssu8g0634 493 Gene3D - 380 492 IPR027417 -
Ssu8g0634 493 SUPERFAMILY Cdc48 domain 2-like 67 157 IPR029067 -
Ssu8g0634 493 SMART AAA_5 191 302 IPR003593 -
Ssu8g0634 493 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 1 214 - -
Ssu8g0634 493 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 213 491 - -
Ssu8g0634 493 SUPERFAMILY ADC-like 1 65 IPR009010 -
Ssu8g0634 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 379 IPR027417 -
Ssu8g0634 493 CDD AAA 397 491 - -
Ssu8g0634 493 Gene3D - 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0634 Ssu-Chr8 10458153 10462184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0634 360 491 Calmodulin-binding Proteins AT3G56690 45.455 9.83e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0634 K13525 - gmx:100783508 885.56