Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0627 ATGGCTGTTGCTGGTGTGCATAATGTGACTGTGCTGGAATCTACTTTCCTAAGGGACTCCCATTCTCAGTCATCTGGGAGGCAAGGAGATGTAGGGAGGGGAGGCACTCGGTCGTCTTCAGTCTTGCAAATGTGGCGAGAGATTGAAGATGAGCAGGTAGTGAGACAAGTTCAAGGAAGACCTGGGGAGGTATTACTTCAACAAAGGAGCGATGGGTTGGCTGTGGACCTCTCACAGGAGAATATGCCAGATAGCAGCAACCAGAGAGAAGGGCATATGATAGAGGATGCAGTTTTGGGTGAGAATGATTCTGAAACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACAGGAGGAATTAAACAACTCTAGCCGTGAAAACTCCTCAGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGACAAATTTTCAGGGAATGGATGAATAGTGGTTCCAGGGATCATGCATCAAATAATTCCCACGGAAATAATGGTTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGTATCATTAGGGAGTGGGTACAGATGAGTAGCCAGCAGAGAGGTTTTCCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAATTGGTGCCCAAATTGATTGTGTTCGTGATAGATTTGTTGTTAATCAGAGTGAGGGCCAAACTGAGCATATACGGAGGGGAATCCGTAAATTATGTGGTCGACAGGTGCTGCTTGATATGCTTAAGAAGGCTGAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGTTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGATAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAGCAGACTGTATCAGGTTTAAGGGAAGGTTTCTTTTTTAGAAAGGACAATTTTGGTTGCAGTCAAGCAACCAGTAACCCATCTGATACCTCGTCCGAGAGTGATAGTGATGTTAATACAATTGAACAAACTGGAGCTAGCTGTTCACAAGCAGTCCCAACTGTACATTCTGAACAATCTGAGCCTAATAACAAGGGAAGTGATATACCTCAGATACCAGGTGATCAAATTTGTTCACAAGGAACCACTTGTGAGAATTTAGATTGGCAAGGCTCTACTGCTCATGTAGAAACAAGAGATTGGGAATCATCTCCCAGTATCAGGGTTGAAAGAGGAGATGGCACTAGACAAAATGTTGATATGATGCCAACCGGAGATCCTTCTAATGACCTTACCCAACAAAACTTGCAAATTGAAGATACAGAGCATGGCAATATGCAAGAGTTAAGTGAGGTACATACTGAGCAATCTCAGTGGGGTGATATAACTAATGATGAAAGCAATTTATCAAATCATGATGATCGTGTATATAGCAATATTGTTGGTGATGTGGATTTGATTGAATCTATTGCTCTGGAAGGAGAGCAACAGGAAGAAGTCATTATTGAAAATGACGGAAGTGACTGGCATCCAAGTGTGGATGATAATCAGCTCAGTAGCACAACAAATGAATGGCCCCAAAATGTATTGGGAAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAGGCCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCTGAAGATGACAATGTATACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTAATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCGGGGCAACAGAGTAGAGGTCCAATTGTTGGTCCTCAGGGTACTGTTAATAGCTCACTTGACCGACCCTTGCCACCAACACCTCCGCCTCTGCCCTTATGGGATAGGCACTCACGTCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCCTAGGAATTGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAACTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTAAATCGCTCAGCTGGTTCTTCAGGAATATATGACAGGGTTTCACCAGATGATAAATCTAAATGGGAATGTGTGAGGAACGGACTTTGTTGTATATGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTGCTCCAAAGTAAAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGAGCTTATTCTATACTATAA 2526 0.4323 MAVAGVHNVTVLESTFLRDSHSQSSGRQGDVGRGGTRSSSVLQMWREIEDEQVVRQVQGRPGEVLLQQRSDGLAVDLSQENMPDSSNQREGHMIEDAVLGENDSETWSQSQNEFHDEQEELNNSSRENSSDFGEVERERVRQIFREWMNSGSRDHASNNSHGNNGSRGEWLGETEQERVSIIREWVQMSSQQRGFPSGENREEQSSEIGAQIDCVRDRFVVNQSEGQTEHIRRGIRKLCGRQVLLDMLKKAEMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSIDNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDNFGCSQATSNPSDTSSESDSDVNTIEQTGASCSQAVPTVHSEQSEPNNKGSDIPQIPGDQICSQGTTCENLDWQGSTAHVETRDWESSPSIRVERGDGTRQNVDMMPTGDPSNDLTQQNLQIEDTEHGNMQELSEVHTEQSQWGDITNDESNLSNHDDRVYSNIVGDVDLIESIALEGEQQEEVIIENDGSDWHPSVDDNQLSSTTNEWPQNVLGSEDGENSRMQEQEAPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSPLAEQDSGQQSRGPIVGPQGTVNSSLDRPLPPTPPPLPLWDRHSRHDNWSQSDINNQRLGIEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIYDRVSPDDKSKWECVRNGLCCICCESNIDSLLYRCGHMCTCSKCANDLLQSKRKCPMCQAPVVEVIRAYSIL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0627 841 MobiDBLite consensus disorder prediction 521 546 - -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 647 678 - -
Ssu8g0627 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 771 839 IPR013083 -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 647 695 - -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 411 425 - -
Ssu8g0627 841 SUPERFAMILY RING/U-box 777 834 - -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 110 135 - -
Ssu8g0627 841 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 840 - -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 516 546 - -
Ssu8g0627 841 ProSiteProfiles Zinc finger RING-type profile. 789 828 IPR001841 -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 404 439 - -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 148 172 - -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 17 39 - -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 151 170 - -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 102 135 - -
Ssu8g0627 841 Pfam Zinc finger, C3HC4 type (RING finger) 786 833 - -
Ssu8g0627 841 Coils Coil 717 744 - -
Ssu8g0627 841 CDD mRING-HC-C3HC5_NEU1 789 827 - -
Ssu8g0627 841 MobiDBLite consensus disorder prediction 332 390 - -
Ssu8g0627 841 PANTHER PROTEIN, PUTATIVE-RELATED 1 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0627 Ssu-Chr8 10278788 10283343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0627 789 835 C3H Transcription Factor Family AT3G06140 38.298 5.86e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0627 - - gmx:100804887 1451.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0627 8 10278788 10283343 Ssu8g0627 8 10278788 10283343 ECH
Ssu8g0627 8 10278788 10283343 Ssu3g2422 3 75752159 75756444 PCT