Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0626 ATGGCGAAGGGAACCGATTCCGACGAGTTCGTGTTGCTTTCCAGGGTCCGTACGGGTCTGAAGAGGGAGTTCGCATTCGCCATGAAGGCCCAATCCGAGATCTGCGGCGCTTCTTTGGGCCGGACCCGGGCCAGCAAGAACCGGCCCGAGGCGCCGGTTCAGACGGCCTCCGCCCGCAAGCGGCCCAGGAAGTCGTCCGAGGAGCCGAAACCCTCGGAGGACGCCATGAGCGAGGAAGAGGCCAAGAGCGACGTGGTGGATCTTCAGAGCGACGACGAGCCAAAGAATCACGCGGGAGAGTCTGCGCCAATGCCGTTTCGGGAAGAGGAACCGAAGGTTGATGTCGTTTTGGAAACTGTTATCAGCGAAGAGGAACCAAAGAATGATGTCGTTTTTGAAACTGCCATCAGCGAGGAGGAGCAGAAGAATGATGTCGTTTTTGAAACTGCCATCAGCGAAGAGGAGCAGAAGAATGATCCGGTGTTGGAGACTGTGATCAACGAAGAAGAGGAACCTACCGTGGCTGGAACGTCGAAGGAAGAGGTTGTGGATGAGATGGCACAAGCTCAACCCGTTTGTGAAATTACAGAGGAATCGGAGAAGGGTGTTTCAGAGGAGAAAGATGCAACCCTAGTTTTGGTTAATGATGATAAGAAGGGGAAGAAAAAGCGGTTGGAGAAGCCTCAGACGGTGAGGAGGTTTACGCGGTCAGCATTGAAGGTGAAATCTGAGGAAACAAACGAGGGGGAACATGTTAGTGCGGTTGGGATTGATGATGGTGTAAAGAGGGAAACTGAAACTGAGGCTTCGTTGTTAATGACTAGTCCAGCTTCGGTAAATATTTCGAATACTAGGTTGAAGAAGTTTCCTACCAAGTTGAAAGATCTTTTGGCTACGGGGATTCTTGAGGGATTGCCAGTGAGGTACAGGAAGGGAACGAAGGCACGGCGACCTGGAGAAACGGGGCTTCAGGGAGTGATTCGAGACTCTGGCGTTTTGTGCTTTTGTGAGATTTGTAAGGGGGTTGAGGTTGTTACGCCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAACAAGCGTCCCCCGGAGTATATTTACATTGGTAATGGAAATAGTGGATATACCCTCCGCCATGTAATGAATGCCTTCTGCAATTTACCATTGGAGTCCCTGGAGGAAGCCGTCCAAAAGGTCCTTGGTGACTTCACTATGAAGAAATCTTCCATCTGTTTGAACTGCCGAGGAGCGTGCAAGGGTGTGTCAAGACTAGTATGTGATTCATGCAAGGTTGTGTCAAGCCCCCCTCAAACAGCTGTGGCTAGCAGCAAAAGAGTTTCACCACCAGTTCAACCCAGATCACCAGAATCAGTTGTGGTTCAAAAGTCATTAGACAATGGGATGCAGCCAAATTCATTAGACAATGGGATGCAGCCAAATTCATTAGATAATGGGATGCAGCCTAATTCATTAAACAATGGGATGAAGGACGGTGCATCTTGTGGTAAGAGCCGGGGAAGACCATCTAAGAAATCACCAGAACAAGTTGTGGTTCAAAAGTTATTAGACAATGAGATGCAGCCAAATTCATTAGACAATGGGATGCAGCCAAATTCATTAGATAATGGGATGCAGCCAAATTCATTAAACAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAggaTCTGCGCTTGCATAAATTGGTGTTTGAAGCAGATGTTTTGCCAGATGGAACTGAAGTAGCCTACTATGCTCATGGAAAGAAACTGTTGGTTGGTTACAAAAGGGGATATGGAATTTTTTGTACCTGCTGCAACTCTGAGGTGAGTGCCTCAGTGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAGCCTTACCTGCACATATACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTCTATCAAAAGATCGGAGGTTTTCCAACAATGATAATGATGACCTCTGCATCATATGCGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGattGTGTCCCTCTACCATGCATTCCTAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTACAGAAAGACAGGCATGGGCAACATAATGTGAATGCCCTGGCAGCTGGAAGGATTGCAGGCACTGATATTTTGGATCAGATAAACCCAAGATGCATTCGTGTTGTCAAAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGCCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAAAAAGAATATCACGTTGGATGTTTGAAAGATCATAATATGCAGAACCTAGAGGAATTGCCTGAAGGGAATTGGTTCTGTAGCACAAATTGCAATCAAATTCATTCTGCTCTGATGGAATTGGTGGCTTGTGGGGAGAAGAATATCCCGGATTCCCTTCTaagtttgattaaaaagaaGCATGAAGAGAAAAGTTTAGACATTGAACCTGGTCTTGATATTAAATGGAGGGTTATAAACTGGAAATTAGATGATTCTAATGAAATGAGGAAATTGCTTTCAAAAGCTGTTGCCATTTTCCATgAGAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGTGATTTCATTCCAACGATGTTGTTTGGAAGGAACATTCGGGGTCAAGATTTTGGTGGAATGTACTGTGCAATACTTACTGTCAACCAGGTTGTTGTGTCTGCTGGAGTATTTCGTGTCTTTGGGTCAGAAATAGCAGAGCTTCCATTAGTGGCGACAACTACGGATTATCAAGGACAGGGTTATTTTCAGTGCCTGTTTTCTTGCATTGAGACGCTACTTGGATCTTTAAATGTGAGAAACCTTGTCCTACCGGCTGCTGATGAAGCTGAATCAATATGGACCGGTAAATTTGGGTTTACGAAGCTAGCGCAAGATGAGATTAACAAGTATAAGAAATTTTATCGCATGATGATATTTCAAGGGACCTCAGTGTTACAGAAGCCTGTTCCTGCACTCTGA 3075 0.4559 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPEAPVQTASARKRPRKSSEEPKPSEDAMSEEEAKSDVVDLQSDDEPKNHAGESAPMPFREEEPKVDVVLETVISEEEPKNDVVFETAISEEEQKNDVVFETAISEEEQKNDPVLETVINEEEEPTVAGTSKEEVVDEMAQAQPVCEITEESEKGVSEEKDATLVLVNDDKKGKKKRLEKPQTVRRFTRSALKVKSEETNEGEHVSAVGIDDGVKRETETEASLLMTSPASVNISNTRLKKFPTKLKDLLATGILEGLPVRYRKGTKARRPGETGLQGVIRDSGVLCFCEICKGVEVVTPTVFELHAGSANKRPPEYIYIGNGNSGYTLRHVMNAFCNLPLESLEEAVQKVLGDFTMKKSSICLNCRGACKGVSRLVCDSCKVVSSPPQTAVASSKRVSPPVQPRSPESVVVQKSLDNGMQPNSLDNGMQPNSLDNGMQPNSLNNGMKDGASCGKSRGRPSKKSPEQVVVQKLLDNEMQPNSLDNGMQPNSLDNGMQPNSLNNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTEVAYYAHGKKLLVGYKRGYGIFCTCCNSEVSASVFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVLQKDRHGQHNVNALAAGRIAGTDILDQINPRCIRVVKTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCSTNCNQIHSALMELVACGEKNIPDSLLSLIKKKHEEKSLDIEPGLDIKWRVINWKLDDSNEMRKLLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFGGMYCAILTVNQVVVSAGVFRVFGSEIAELPLVATTTDYQGQGYFQCLFSCIETLLGSLNVRNLVLPAADEAESIWTGKFGFTKLAQDEINKYKKFYRMMIFQGTSVLQKPVPAL 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0626 1024 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 859 999 IPR016181 -
Ssu8g0626 1024 SUPERFAMILY FYVE/PHD zinc finger 654 709 IPR011011 -
Ssu8g0626 1024 CDD PHD1_AIRE 666 706 - -
Ssu8g0626 1024 ProSitePatterns Zinc finger PHD-type signature. 667 706 IPR019786 -
Ssu8g0626 1024 MobiDBLite consensus disorder prediction 37 111 - -
Ssu8g0626 1024 Pfam Tify domain binding domain 325 372 IPR032308 -
Ssu8g0626 1024 Pfam Tify domain binding domain 601 648 IPR032308 -
Ssu8g0626 1024 MobiDBLite consensus disorder prediction 521 559 - -
Ssu8g0626 1024 MobiDBLite consensus disorder prediction 60 111 - -
Ssu8g0626 1024 SUPERFAMILY FYVE/PHD zinc finger 747 809 IPR011011 -
Ssu8g0626 1024 MobiDBLite consensus disorder prediction 436 496 - -
Ssu8g0626 1024 MobiDBLite consensus disorder prediction 436 565 - -
Ssu8g0626 1024 Gene3D - 850 1019 - -
Ssu8g0626 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 749 812 IPR013083 -
Ssu8g0626 1024 MobiDBLite consensus disorder prediction 150 186 - -
Ssu8g0626 1024 ProSiteProfiles Zinc finger PHD-type profile. 664 709 IPR019787 -
Ssu8g0626 1024 MobiDBLite consensus disorder prediction 150 164 - -
Ssu8g0626 1024 PANTHER AUTOIMMUNE REGULATOR 1 1020 - -
Ssu8g0626 1024 SMART PHD_3 754 809 IPR001965 -
Ssu8g0626 1024 SMART PHD_3 666 707 IPR001965 -
Ssu8g0626 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 732 IPR013083 -
Ssu8g0626 1024 PANTHER AUTOIMMUNE REGULATOR 1 1020 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0626 Ssu-Chr8 10215202 10222636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0626 286 1021 PHD Transcription Factor Family AT2G36720 45.442 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0626 - - gmx:100803825 1518.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0626 8 10215202 10222636 Ssu8g0626 8 10215202 10222636 ECH
Ssu8g0626 8 10215202 10222636 Ssu3g2426 3 75828130 75831567 PCT