Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0623 ATGATTTCAAGGGCCTCATCTAGCTTCCAAAGCGTTCATCAAGGGCTTCAGATGTTCCCTGACCCCGAAGATTTGTTGTCACCCTCTGTGGAAATAAACTCTGGCTCAGGTTCACACTCTAGTTCCCTCCTCTTCAATCTTTCTGTTATGAAGGACAAGCTTAGTCAGGTGCAGACCCTGGTAAGTGTTGTTCTCTCCCCAGATCAAAGCCTACCCGAGTCAACTTCCATGGCCATATCCAGCATGAATTCCACAATCCAAGAAATCATAGTGACTGCCACATCAATGATGTTCACCTGCCAACAGATGGCTCTCACTATCCCTCCAGGTACTAATAATACTACTAATACATGCACCAACAAATTGCACCACCAGAACAAGTTGCCTCACTCAAATAATTTTGGCGACAATAGAAGTGTGCTTGGTAACATAGGCACAGATATTAGTGGTCAGGGTTTGTTTTCTAGTCCTGAGTCAGAGGCACTGGACTGGTTTAGTGAAAGCTATAACAATAACGATGAGAATAGCAATGTTAAGGAAGATGATCCAAGCGTTGCAATCAGTGAAAACAATATTACTAGAGGAGGAGTTTCTCCAAGGGATGAAGTTGAACTTGAACCTAATGAAGAAGGCTACAGAGGGCTTTCACCAAATAATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACTCACTATTGCCAAGTTTGTGGCAAAGGATTTAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACTAATGCTGCTTTGAGTAACCCAATCAAGAATAGGGGGGGTTTGGAAGGGGGAAGAGAGTGTTTGATGAGTGTGAAGCCCAAGGGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCAAAGGCATGCCAAGTTCCAGCCATTGAAATCCATGATTTGTGCTAAGAACCATTACAAGAGAAGCCATTGCCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTTTCTGATCTGAGGACACATGAAAAGCACTGTGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACCACGTTTTCTAGGAAAGACAAGCTTTTGGGTCATGTTGCTTTGTTCGTGGGGCACCAACCAGCTATAAACAATGGTCTGTCATACTCGGGAAAATTAGAGCGGCACACATTGCAAAAGCAGAATCATGCTAGTTCAAGATGA 1236 0.4458 MISRASSSFQSVHQGLQMFPDPEDLLSPSVEINSGSGSHSSSLLFNLSVMKDKLSQVQTLVSVVLSPDQSLPESTSMAISSMNSTIQEIIVTATSMMFTCQQMALTIPPGTNNTTNTCTNKLHHQNKLPHSNNFGDNRSVLGNIGTDISGQGLFSSPESEALDWFSESYNNNDENSNVKEDDPSVAISENNITRGGVSPRDEVELEPNEEGYRGLSPNNSDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNRGGLEGGRECLMSVKPKGYSCPQEGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLLGHVALFVGHQPAINNGLSYSGKLERHTLQKQNHASSR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0623 411 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 7 391 IPR044300 GO:0010044|GO:0010447
Ssu8g0623 411 SMART c2h2final6 293 326 IPR013087 -
Ssu8g0623 411 SMART c2h2final6 236 258 IPR013087 -
Ssu8g0623 411 SMART c2h2final6 331 353 IPR013087 -
Ssu8g0623 411 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Ssu8g0623 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Ssu8g0623 411 PANTHER OS08G0562300 PROTEIN 7 391 - -
Ssu8g0623 411 Gene3D Classic Zinc Finger 230 276 - -
Ssu8g0623 411 Gene3D Classic Zinc Finger 329 379 - -
Ssu8g0623 411 SUPERFAMILY beta-beta-alpha zinc fingers 234 261 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0623 Ssu-Chr8 10188175 10189410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0623 40 386 C2H2 Transcription Factor Family AT5G22890 48.179 2.01e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0623 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0623 - - gmx:100802769 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0623 8 10188175 10189410 Ssu8g0623 8 10188175 10189410 ECH
Ssu8g0623 8 10188175 10189410 Ssu3g2430 3 75877439 75878623 PCT