Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0622 ATGTTGTCAGAAATGGACATGGAAGCCATGGGCACAGAGGAACTTGTCATGGGGTCTTGTAACAACGATGCCACCAACATAGCCAAAGGGAAGCGCACAAAGCGGCGCCTGAGACCTTTGTCTCCTTGTGCTGTCGCTGCCGCCACCACCGTCGCCATGACATCTAGCTGTTCAAGCGCTTCTGGAGGCGGTGGGTCGTTTTCATCCACCACCTTCGAGGAGGATGAGGAAGACATGGCTAACTGTTTGATTCTCCTAGCACAAGGAAGAGGAGGAGGGGATCCTCATCATAAGGACCTATGTGGTGATGTTAAGACAGGGAAGGGTAGCaccaaaaatattgatttctaTGTTTATGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCACTAGGAGGCCACAGGGCAAGTCACAAGAAGCTTAAAGTCATAGCTCAGGAGGAAAAGAAGTCATCACCACCGCCGCTGCTGCCACCGCCATTGCAACTGTTTAATTTTGAAGAAGCAAAACAAAGTCACATGAAGATTAGTCCTTCAGTTTCGCTTCAACTGGGGTGTGGCAATAATAGGGGTGGTTTGAATTTCCATGGCAATAACAAGACCAAGATTCATGAGTGTTCTATTTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGGGCATCTATTACTGCTACTAATAATACTGTTCAGACAACAACTTCTGACGGCGGTGTTGAAGTTGAGCCTCGGAATGTTCTAGAATTGGATCTTAACCTTCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTCCGGCGAATCAGAATTCTATGATGCTTTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 894 0.4754 MLSEMDMEAMGTEELVMGSCNNDATNIAKGKRTKRRLRPLSPCAVAAATTVAMTSSCSSASGGGGSFSSTTFEEDEEDMANCLILLAQGRGGGDPHHKDLCGDVKTGKGSTKNIDFYVYECKTCNRTFPSFQALGGHRASHKKLKVIAQEEKKSSPPPLLPPPLQLFNFEEAKQSHMKISPSVSLQLGCGNNRGGLNFHGNNKTKIHECSICGSEFTSGQALGGHMRRHRASITATNNTVQTTTSDGGVEVEPRNVLELDLNLPAPEDDLRDSKFQFPANQNSMMLSAAPALVGCHY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0622 297 Gene3D Classic Zinc Finger 116 229 - -
Ssu8g0622 297 PANTHER ZINC FINGER PROTEIN ZAT5 9 297 - -
Ssu8g0622 297 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Ssu8g0622 297 SMART c2h2final6 207 229 IPR013087 -
Ssu8g0622 297 SMART c2h2final6 119 141 IPR013087 -
Ssu8g0622 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Ssu8g0622 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
Ssu8g0622 297 SUPERFAMILY beta-beta-alpha zinc fingers 118 229 IPR036236 -
Ssu8g0622 297 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 9 297 - -
Ssu8g0622 297 Pfam C2H2-type zinc finger 207 231 - -
Ssu8g0622 297 Pfam C2H2-type zinc finger 118 143 - -
Ssu8g0622 297 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0622 Ssu-Chr8 10175428 10176321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0622 10 297 C2H2 Transcription Factor Family AT2G28200 46.154 2.92e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0622 zf-C2H2_6 2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0622 - - gmx:100788646 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0622 8 10175428 10176321 Ssu8g0622 8 10175428 10176321 ECH
Ssu8g0622 8 10175428 10176321 Ssu7g1230 7 27134585 27136153 ECH
Ssu7g2473 7 48222384 48223232 Ssu8g0622 8 10175428 10176321 ECH
Ssu4g0970 4 15478605 15479441 Ssu8g0622 8 10175428 10176321 ECH
Ssu8g0622 8 10175428 10176321 Ssu3g2432 3 75898278 75899138 PCT