Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu8g0622 | ATGTTGTCAGAAATGGACATGGAAGCCATGGGCACAGAGGAACTTGTCATGGGGTCTTGTAACAACGATGCCACCAACATAGCCAAAGGGAAGCGCACAAAGCGGCGCCTGAGACCTTTGTCTCCTTGTGCTGTCGCTGCCGCCACCACCGTCGCCATGACATCTAGCTGTTCAAGCGCTTCTGGAGGCGGTGGGTCGTTTTCATCCACCACCTTCGAGGAGGATGAGGAAGACATGGCTAACTGTTTGATTCTCCTAGCACAAGGAAGAGGAGGAGGGGATCCTCATCATAAGGACCTATGTGGTGATGTTAAGACAGGGAAGGGTAGCaccaaaaatattgatttctaTGTTTATGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCACTAGGAGGCCACAGGGCAAGTCACAAGAAGCTTAAAGTCATAGCTCAGGAGGAAAAGAAGTCATCACCACCGCCGCTGCTGCCACCGCCATTGCAACTGTTTAATTTTGAAGAAGCAAAACAAAGTCACATGAAGATTAGTCCTTCAGTTTCGCTTCAACTGGGGTGTGGCAATAATAGGGGTGGTTTGAATTTCCATGGCAATAACAAGACCAAGATTCATGAGTGTTCTATTTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGGGCATCTATTACTGCTACTAATAATACTGTTCAGACAACAACTTCTGACGGCGGTGTTGAAGTTGAGCCTCGGAATGTTCTAGAATTGGATCTTAACCTTCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTCCGGCGAATCAGAATTCTATGATGCTTTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG | 894 | 0.4754 | MLSEMDMEAMGTEELVMGSCNNDATNIAKGKRTKRRLRPLSPCAVAAATTVAMTSSCSSASGGGGSFSSTTFEEDEEDMANCLILLAQGRGGGDPHHKDLCGDVKTGKGSTKNIDFYVYECKTCNRTFPSFQALGGHRASHKKLKVIAQEEKKSSPPPLLPPPLQLFNFEEAKQSHMKISPSVSLQLGCGNNRGGLNFHGNNKTKIHECSICGSEFTSGQALGGHMRRHRASITATNNTVQTTTSDGGVEVEPRNVLELDLNLPAPEDDLRDSKFQFPANQNSMMLSAAPALVGCHY | 297 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu8g0622 | 297 | Gene3D | Classic Zinc Finger | 116 | 229 | - | - | |
Ssu8g0622 | 297 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 9 | 297 | - | - | |
Ssu8g0622 | 297 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 121 | 141 | IPR013087 | - | |
Ssu8g0622 | 297 | SMART | c2h2final6 | 207 | 229 | IPR013087 | - | |
Ssu8g0622 | 297 | SMART | c2h2final6 | 119 | 141 | IPR013087 | - | |
Ssu8g0622 | 297 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 119 | 146 | IPR013087 | - | |
Ssu8g0622 | 297 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 207 | 234 | IPR013087 | - | |
Ssu8g0622 | 297 | SUPERFAMILY | beta-beta-alpha zinc fingers | 118 | 229 | IPR036236 | - | |
Ssu8g0622 | 297 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 9 | 297 | - | - | |
Ssu8g0622 | 297 | Pfam | C2H2-type zinc finger | 207 | 231 | - | - | |
Ssu8g0622 | 297 | Pfam | C2H2-type zinc finger | 118 | 143 | - | - | |
Ssu8g0622 | 297 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 209 | 229 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu8g0622 | Ssu-Chr8 | 10175428 | 10176321 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu8g0622 | 10 | 297 | C2H2 Transcription Factor Family | AT2G28200 | 46.154 | 2.92e-60 | 192 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Ssu8g0622 | zf-C2H2_6 | 2e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu8g0622 | - | - | gmx:100788646 | 383.259 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ssu8g0622 | 8 | 10175428 | 10176321 | Ssu8g0622 | 8 | 10175428 | 10176321 | ECH | |
Ssu8g0622 | 8 | 10175428 | 10176321 | Ssu7g1230 | 7 | 27134585 | 27136153 | ECH | |
Ssu7g2473 | 7 | 48222384 | 48223232 | Ssu8g0622 | 8 | 10175428 | 10176321 | ECH | |
Ssu4g0970 | 4 | 15478605 | 15479441 | Ssu8g0622 | 8 | 10175428 | 10176321 | ECH | |
Ssu8g0622 | 8 | 10175428 | 10176321 | Ssu3g2432 | 3 | 75898278 | 75899138 | PCT |